Large distribution and high sequence identity of a Copia-type retrotransposon in angiosperm families

Widespread and frequent horizontal transfers of transposable elements in plants

(2014) M. El Baidouri et al.   GENOME RESEARCH

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

The Tvv1 retrotransposon family is conserved between plant genomes separated by over 100 million years

(2014) Cédric Moisy et al.   THEORETICAL AND APPLIED GENETICS

Six species of Psilanthus transferred to Coffea (Coffeeae, Rubiaceae)

(2014) A. P. Davis   Phytotaxa

Evolutionary history of the Afro-Madagascan Ixora species (Rubiaceae): species diversification and distribution of key morphological traits inferred from dated molecular phylogenetic trees

(2013) J. Tosh et al.   ANNALS OF BOTANY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution

(2013) Alexis Dereeper et al.   PLANT MOLECULAR BIOLOGY

The First 50 Plant Genomes

(2013) Todd P. Michael et al.   Plant Genome

Methods for detection of horizontal transfer of transposable elements in complete genomes

(2012) Marcos Oliveira de Carvalho et al.   GENETICS AND MOLECULAR BIOLOGY

FISH using a gag-like fragment probe reveals a common Ty3-gypsy-like retrotransposon in genome of Coffea species

(2012) Priscila Mary Yuyama et al.   GENOME

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

A multi gene sequence-based phylogeny of the Musaceae (banana) family

(2011) Pavla Christelová et al.   BMC EVOLUTIONARY BIOLOGY

RBCS1 expression in coffee: Coffea orthologs, Coffea arabica homeologs, and expression variability between genotypes and under drought stress

(2011) Pierre Marraccini et al.   BMC PLANT BIOLOGY

The evolutionary history of mariner-like elements in Neotropical drosophilids

(2011) Gabriel Luz Wallau et al.   GENETICA

Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae)

(2011) Perla Hamon et al.   MOLECULAR GENETICS AND GENOMICS

Psilanthus mannii, the type species of Psilanthus, transferred to Coffea

(2011) Aaron P. Davis   NORDIC JOURNAL OF BOTANY

Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea)

(2011) Qingyi Yu et al.   PLANT JOURNAL

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution

(2010) Sarah Schaack et al.   TRENDS IN ECOLOGY & EVOLUTION

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

A New Family of Ty1-copia-Like Retrotransposons Originated in the Tomato Genome by a Recent Horizontal Transfer Event

(2009) X. Cheng et al.   GENETICS

Genome organization of the tomatosunlocus and characterization of the unusual retrotransposonRider

(2009) Ning Jiang et al.   PLANT JOURNAL

Discovery and assembly of repeat family pseudomolecules from sparse genomic sequence data using the Assisted Automated Assembler of Repeat Families (AAARF) algorithm

(2008) Jeremy D DeBarry et al.   BMC BIOINFORMATICS

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

Insights into the Musa genome: syntenic relationships to rice and between Musa species

(2008) Magali Lescot et al.   BMC GENOMICS

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit

(2008) H. Xiao et al.   SCIENCE