Gene network analysis ofArabidopsis thalianaflower development through dynamic gene perturbations

Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance

(2014) Sara Simonini et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gene coexpression patterns during early development of the native Arabidopsis reproductive meristem: novel candidate developmental regulators and patterns of functional redundancy

(2014) Otho Mantegazza et al.   PLANT JOURNAL

Timing Mechanism Dependent on Cell Division Is Invoked by Polycomb Eviction in Plant Stem Cells

(2014) B. Sun et al.   SCIENCE

Atkinesin-13A Modulates Cell-Wall Synthesis and Cell Expansion in Arabidopsis thaliana via the THESEUS1 Pathway

(2014) Ushio Fujikura et al.   PLoS Genetics

Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development

(2014) Alice Pajoro et al.   GENOME BIOLOGY

Physical clustering of FLC alleles during Polycomb-mediated epigenetic silencing in vernalization

(2013) S. Rosa et al.   GENES & DEVELOPMENT

Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS

(2013) D. S. O'Maoileidigh et al.   PLANT CELL

A Genomic-Scale Artificial MicroRNA Library as a Tool to Investigate the Functionally Redundant Gene Space in Arabidopsis

(2013) F. Hauser et al.   PLANT CELL

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Technologies for systems-level analysis of specific cell types in plants

(2012) Dongxue Wang et al.   PLANT SCIENCE

Molecular basis for the specification of floral organs by APETALA3 and PISTILLATA

(2012) S. E. Wuest et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SWI2/SNF2 chromatin remodeling ATPases overcome polycomb repression and control floral organ identity with the LEAFY and SEPALLATA3 transcription factors

(2012) M.-F. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characterization of MADS-domain transcription factor complexes in Arabidopsis flower development

(2012) C. Smaczniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The J-Domain Protein J3 Mediates the Integration of Flowering Signals inArabidopsis

(2011) Lisha Shen et al.   PLANT CELL

AGAMOUS Terminates Floral Stem Cell Maintenance in Arabidopsis by Directly Repressing WUSCHEL through Recruitment of Polycomb Group Proteins

(2011) X. Liu et al.   PLANT CELL

Differentiation of Arabidopsis Guard Cells: Analysis of the Networks Incorporating the Basic Helix-Loop-Helix Transcription Factor, FAMA

(2011) C. Hachez et al.   PLANT PHYSIOLOGY

Arabidopsis Female Gametophyte Gene Expression Map Reveals Similarities between Plant and Animal Gametes

(2010) Samuel E. Wuest et al.   CURRENT BIOLOGY

STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings

(2010) A. Skylar et al.   DEVELOPMENT

Transcriptional Control of a Plant Stem Cell Niche

(2010) Wolfgang Busch et al.   DEVELOPMENTAL CELL

Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control

(2010) Yuling Jiao et al.   Molecular Systems Biology

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

ArabidopsisRETINOBLASTOMA-RELATED Is Required for Stem Cell Maintenance, Cell Differentiation, and Lateral Organ Production

(2010) Lorenzo Borghi et al.   PLANT CELL

Temporal Control of Trichome Distribution by MicroRNA156-Targeted SPL Genes in Arabidopsis thaliana

(2010) N. Yu et al.   PLANT CELL

Orchestration of Floral Initiation by APETALA1

(2010) K. Kaufmann et al.   SCIENCE

Floral stem cell termination involves the direct regulation of AGAMOUS by PERIANTHIA

(2009) P. Das et al.   DEVELOPMENT

A timing mechanism for stem cell maintenance and differentiation in the Arabidopsis floral meristem

(2009) B. Sun et al.   GENES & DEVELOPMENT

Microarray background correction: maximum likelihood estimation for the normal-exponential convolution

(2008) J. D. Silver et al.   BIOSTATISTICS

A protocol for unraveling gene regulatory networks

(2008) Stefan C Materna et al.   Nature Protocols

Transcriptome-Wide Analysis of Uncapped mRNAs in Arabidopsis Reveals Regulation of mRNA Degradation

(2008) Y. Jiao et al.   PLANT CELL