Ultra-fast alterations in mRNA levels uncover multiple players in light stress acclimation in plants

Efficient high light acclimation involves rapid processes at multiple mechanistic levels

(2015) Karl-Josef Dietz   JOURNAL OF EXPERIMENTAL BOTANY

Computational and analytical challenges in single-cell transcriptomics

(2015) Oliver Stegle et al.   NATURE REVIEWS GENETICS

The Roles of ROS and ABA in Systemic Acquired Acclimation

(2015) Ron Mittler et al.   PLANT CELL

Genome-wide analysis of alternative splicing of pre-mRNA under salt stress in Arabidopsis

(2014) Feng Ding et al.   BMC GENOMICS

Salt stress-induced Ca2+ waves are associated with rapid, long-distance root-to-shoot signaling in plants

(2014) W.-G. Choi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A tidal wave of signals: calcium and ROS at the forefront of rapid systemic signaling

(2014) Simon Gilroy et al.   TRENDS IN PLANT SCIENCE

Control of Transcriptional Elongation

(2013) Hojoong Kwak et al.   Annual Review of Genetics

Linking genes of unknown function with abiotic stress responses by high-throughput phenotype screening

(2013) Song Luhua et al.   PHYSIOLOGIA PLANTARUM

Temporal-Spatial Interaction between Reactive Oxygen Species and Abscisic Acid Regulates Rapid Systemic Acclimation in Plants

(2013) N. Suzuki et al.   PLANT CELL

A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon

(2013) Jingyu Zhang et al.   GENOME BIOLOGY

Enhanced seed production under prolonged heat stress conditions inArabidopsis thalianaplants deficient in cytosolic ascorbate peroxidase 2

(2012) Nobuhiro Suzuki et al.   JOURNAL OF EXPERIMENTAL BOTANY

How do plants feel the heat?

(2012) Ron Mittler et al.   TRENDS IN BIOCHEMICAL SCIENCES

Paused RNA Polymerase II as a Developmental Checkpoint

(2011) Michael Levine   CELL

Promoter-proximal Pol II: When stalling speeds things up

(2011) Sergei Nechaev et al.   CELL CYCLE

Fast transcription rates of RNA polymerase II in human cells

(2011) Paolo Maiuri et al.   EMBO REPORTS

Insect oral secretions suppress wound-induced responses in Arabidopsis

(2011) Floriane Consales et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of the MBF1 heat-response regulon of Arabidopsis thaliana

(2011) Nobuhiro Suzuki et al.   PLANT JOURNAL

Extranuclear protection of chromosomal DNA from oxidative stress

(2011) S. Vanderauwera et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ROS signaling: the new wave?

(2011) Ron Mittler et al.   TRENDS IN PLANT SCIENCE

Genetic Engineering for Modern Agriculture: Challenges and Perspectives

(2010) Ron Mittler et al.   Annual Review of Plant Biology

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Linking genotype to phenotype using the Arabidopsis unimutant collection

(2010) Ronan C. O’Malley et al.   PLANT JOURNAL

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Epigenetic regulation of stress responses in plants

(2009) Viswanathan Chinnusamy et al.   CURRENT OPINION IN PLANT BIOLOGY

Early genomic responses to salicylic acid in Arabidopsis

(2009) Francisca Blanco et al.   PLANT MOLECULAR BIOLOGY

The Plant NADPH Oxidase RBOHD Mediates Rapid Systemic Signaling in Response to Diverse Stimuli

(2009) G. Miller et al.   Science Signaling

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Flooding Stress: Acclimations and Genetic Diversity

(2008) J. Bailey-Serres et al.   Annual Review of Plant Biology

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants

(2008) Colin Cavanagh et al.   CURRENT OPINION IN PLANT BIOLOGY

The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors

(2008) Daiqing Huang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis Transcriptome Analysis under Drought, Cold, High-Salinity and ABA Treatment Conditions using a Tiling Array

(2008) A. Matsui et al.   PLANT AND CELL PHYSIOLOGY