Exploring the tertiary gene pool of bread wheat: sequence assembly and analysis of chromosome 5MgofAegilops geniculata

Preparation of sub-genomic fractions enriched for particular chromosomes in polyploid wheat

(2015) J. Vrána et al.   BIOLOGIA PLANTARUM

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes

(2015) Katherine W Jordan et al.   GENOME BIOLOGY

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

(2015) Jarrod A Chapman et al.   GENOME BIOLOGY

Advances in plant chromosome genomics

(2014) Jaroslav Doležel et al.   BIOTECHNOLOGY ADVANCES

Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications

(2014) Stuart J Lucas et al.   BMC GENOMICS

SNP Discovery for mapping alien introgressions in wheat

(2014) Vijay K Tiwari et al.   BMC GENOMICS

Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array

(2014) Shichen Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A

(2014) Naser Poursarebani et al.   PLANT JOURNAL

A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome

(2014) et al.   SCIENCE

Structural and functional partitioning of bread wheat chromosome 3B

(2014) F. Choulet et al.   SCIENCE

Development of a wheat single gene FISH map for analyzing homoeologous relationship and chromosomal rearrangements within the Triticeae

(2014) Tatiana V. Danilova et al.   THEORETICAL AND APPLIED GENETICS

Harvesting the Promising Fruits of Genomics: Applying Genome Sequencing Technologies to Crop Breeding

(2014) Rajeev K. Varshney et al.   PLOS BIOLOGY

Next generation sequencing technologies for next generation plant breeding

(2014) Soham Ray et al.   Frontiers in Plant Science

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Mapping nonrecombining regions in barley using multicolor FISH

(2013) M. Karafiátová et al.   CHROMOSOME RESEARCH

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Reticulate Evolution of the Rye Genome

(2013) M. M. Martis et al.   PLANT CELL

Flow Sorting and Sequencing Meadow Fescue Chromosome 4F

(2013) D. Kopecky et al.   PLANT PHYSIOLOGY

Syntenic Relationships between the U and M Genomes of Aegilops, Wheat and the Model Species Brachypodium and Rice as Revealed by COS Markers

(2013) István Molnár et al.   PLoS One

A 4-gigabase physical map unlocks the structure and evolution of the complex genome of Aegilops tauschii, the wheat D-genome progenitor

(2013) M.-C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Next-generation sequencing applications for wheat crop improvement

(2012) Paul J. Berkman et al.   AMERICAN JOURNAL OF BOTANY

Applications of next-generation sequencing in plant biology

(2012) Ashley N. Egan et al.   AMERICAN JOURNAL OF BOTANY

Next-generation sequencing for understanding and accelerating crop domestication

(2012) R. J. Henry   Briefings in Functional Genomics

Single-copy gene fluorescence in situ hybridization and genome analysis: Acc-2 loci mark evolutionary chromosomal rearrangements in wheat

(2012) Tatiana V. Danilova et al.   CHROMOSOMA

Chromosomes in the flow to simplify genome analysis

(2012) Jaroslav Doležel et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Comparison of Next-Generation Sequencing Systems

(2012) Lin Liu et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Targeted re-sequencing of the allohexaploid wheat exome

(2012) Mark O. Winfield et al.   PLANT BIOTECHNOLOGY JOURNAL

Wheat centromeric retrotransposons: the new ones take a major role in centromeric structure

(2012) Baochun Li et al.   PLANT JOURNAL

Flow Sorting and Molecular Cytogenetic Identification of Individual Chromosomes of Dasypyrum villosum L. (H. villosa) by a Single DNA Probe

(2012) Valentina Grosso et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

Discovery and molecular mapping of a new gene conferring resistance to stem rust, Sr53, derived from Aegilops geniculata and characterization of spontaneous translocation stocks with reduced alien chromatin

(2011) Wenxuan Liu et al.   CHROMOSOME RESEARCH

Unlocking the Barley Genome by Chromosomal and Comparative Genomics

(2011) Klaus F.X. Mayer et al.   PLANT CELL

Next-generation sequencing and syntenic integration of flow-sorted arms of wheat chromosome 4A exposes the chromosome structure and gene content

(2011) Pilar Hernandez et al.   PLANT JOURNAL

Chromosome Isolation by Flow Sorting in Aegilops umbellulata and Ae. comosa and Their Allotetraploid Hybrids Ae. biuncialis and Ae. geniculata

(2011) István Molnár et al.   PLoS One

Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

(2011) Jiří Macas et al.   PLoS One

First Survey of the Wheat Chromosome 5A Composition through a Next Generation Sequencing Approach

(2011) Nicola Vitulo et al.   PLoS One

Organization and Evolution of Subtelomeric Satellite Repeats in the Potato Genome

(2011) Giovana A. Torres et al.   G3-Genes Genomes Genetics

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Synteny between Brachypodium distachyon and Hordeum vulgare as revealed by FISH

(2010) Lu Ma et al.   CHROMOSOME RESEARCH

Molecular cytogenetic mapping of Cucumis sativus and C. melo using highly repetitive DNA sequences

(2010) Dal-Hoe Koo et al.   CHROMOSOME RESEARCH

Development of Chromosome-Specific BAC Resources for Genomics of Bread Wheat

(2010) J. Šafář et al.   CYTOGENETIC AND GENOME RESEARCH

A triptych of the evolution of plant transposable elements

(2010) Maud I. Tenaillon et al.   TRENDS IN PLANT SCIENCE

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley

(2008) Hana Šimková et al.   BMC GENOMICS

Integrated cytogenetic map of mitotic metaphase chromosome 9 of maize: resolution, sensitivity, and banding paint development

(2008) Tatiana V. Danilova et al.   CHROMOSOMA

Physical organisation of simple sequence repeats (SSRs) in Triticeae: structural, functional and evolutionary implications

(2008) A. Cuadrado et al.   CYTOGENETIC AND GENOME RESEARCH

Dynamics and Differential Proliferation of Transposable Elements During the Evolution of the B and A Genomes of Wheat

(2008) M. Charles et al.   GENETICS

Nuclear DNA amount and genome downsizing in natural and synthetic allopolyploids of the genera Aegilops and Triticum

(2008) T. Eilam et al.   GENOME

Increasing the physical markers of wheat chromosomes using SSRs as FISH probes

(2008) Angeles Cuadrado et al.   GENOME

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution

(2008) J. Salse et al.   PLANT CELL

A Physical Map of the 1-Gigabase Bread Wheat Chromosome 3B

(2008) E. Paux et al.   SCIENCE

Characterization of a leaf rust-resistant wheat–Thinopyrum ponticum partial amphiploid BE-1, using sequential multicolor GISH and FISH

(2008) A. Sepsi et al.   THEORETICAL AND APPLIED GENETICS