A direction-selective local-thresholding method, DSLT, in combination with a dye-based method for automated three-dimensional segmentation of cells and airspaces in developing leaves

The iRoCS Toolbox - 3D analysis of the plant root apical meristem at cellular resolution

(2014) Thorsten Schmidt et al.   PLANT JOURNAL

An update: improvements in imaging perfluorocarbon-mounted plant leaves with implications for studies of plant pathology, physiology, development and cell biology

(2014) George R. Littlejohn et al.   Frontiers in Plant Science

Smaller, Faster, Brighter: Advances in Optical Imaging of Living Plant Cells

(2013) Sidney L. Shaw et al.   Annual Review of Plant Biology

Enhancement of leaf photosynthetic capacity through increased stomatal density in Arabidopsis

(2013) Yu Tanaka et al.   NEW PHYTOLOGIST

ACME: Automated Cell Morphology Extractor for Comprehensive Reconstruction of Cell Membranes

(2012) Kishore R. Mosaliganti et al.   PLoS Computational Biology

Segmentation of 3D cell membrane images by PDE methods and its applications

(2011) K. Mikula et al.   COMPUTERS IN BIOLOGY AND MEDICINE

An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images

(2011) C. INDHUMATHI et al.   JOURNAL OF MICROSCOPY

Adaptive Cell Segmentation and Tracking for Volumetric Confocal Microscopy Images of a Developing Plant Meristem

(2011) Min Liu et al.   Molecular Plant

Imaging plant growth in 4D: robust tissue reconstruction and lineaging at cell resolution

(2010) Romain Fernandez et al.   NATURE METHODS

Perfluorodecalin enhances in vivo confocal microscopy resolution of Arabidopsis thaliana mesophyll

(2010) George R. Littlejohn et al.   NEW PHYTOLOGIST

Automated Arabidopsis plant root cell segmentation based on SVM classification and region merging

(2009) Monica Marcuzzo et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Cells Segmentation From 3-D Confocal Images of Early Zebrafish Embryogenesis

(2009) C. Zanella et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Stomagen positively regulates stomatal density in Arabidopsis

(2009) Shigeo S. Sugano et al.   NATURE

Segmentation of Clustered Nuclei With Shape Markers and Marking Function

(2008) Jierong Cheng et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING