4.7 Article

Comparative Proteomics Reveals That a Saxitoxin-Producing and a Nontoxic Strain of Anabaena circinalis Are Two Different Ecotypes

Journal

JOURNAL OF PROTEOME RESEARCH
Volume 13, Issue 3, Pages 1474-1484

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/pr401007k

Keywords

saxitoxin; paralytic shellfish toxins; iTRAQ photosynthesis; ecotype; cyanobacteria; comparative proteomics

Funding

  1. Australian Research Council [DP0880264]
  2. Australian Postgraduate Award
  3. Australian Research Council [DP0880264] Funding Source: Australian Research Council

Ask authors/readers for more resources

In Australia, saxitoxin production is restricted to the cyanobacterial species Anabaena circinalis and is strain-dependent. We aimed to characterize a saxitoxin-producing and nontoxic strain of A. circinalis at the proteomic level using iTRAQ Seven proteins putatively involved in saxitoxin biosynthesis were identified within our iTRAQ experiment for the first time. The proteomic profile of the toxic A. circinalis was significantly different from the nontoxic strain, indicating that each is likely to inhabit a unique ecological niche. Under control growth conditions, the saxitoxin-producing A. circinalis displayed a higher abundance of photosynthetic, carbon fixation and nitrogen metabolic proteins. Differential abundance of these proteins suggests a higher intracellular C:N ratio and a higher concentration of intracellular 2-oxoglutarate in our toxic strain compared with the nontoxic strain. This may be a novel site for posttranslational regulation because saxitoxin biosynthesis putatively requires a 2-oxoglutarate-dependent dioxygenase. The nontoxic A. circinalis was more abundant in proteins, indicating cellular stress. Overall, our study has provided the first insight into differences between a toxic and nontoxic strain of A. circinalis, indicating that they are distinct ecotypes.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Microbiology

Comparative proteomics of the toxigenic diazotroph Raphidiopsis raciborskii (cyanobacteria) in response to iron

Paul M. D'Agostino, Anna C. Y. Yeung, Anne Poljak, Trevor David Waite, Brett A. Neilan

Summary: This study compares the proteomic responses of different toxic and non-toxic strains of Raphidiopsis raciborskii under reduced iron concentrations, revealing that the toxic strain is more competitive during the exponential growth phase, while the non-toxic strain shows reduced protein expression in multiple primary metabolism pathways.

ENVIRONMENTAL MICROBIOLOGY (2021)

Article Microbiology

Symphyonema bifilamentata sp. nov., the Right Fischerella ambigua 108b: Half a Decade of Research on Taxonomy and Bioactive Compounds in New Light

Patrick Jung, Paul M. D'Agostino, Burkhard Buedel, Michael Lakatos

Summary: Research on the cyanobacterial strain 'Fischerella ambigua 108b' unveiled new bioactive compounds and led to the classification of the strain as Symphyonema bifilamentata sp. nov. 97.28 through a polyphasic approach. This newly classified strain sheds light on the bioactive metabolites of heterocytous and true-branching cyanobacteria, suggesting its placement into a separate genus.

MICROORGANISMS (2021)

Article Biochemistry & Molecular Biology

Tailoring Enzyme Stringency Masks the Multispecificity of a Lyngbyatoxin (Indolactam Alkaloid) Nonribosomal Peptide Synthetase

Angela H. Soeriyadi, Sarah E. Ongley, Jan-Christoph Kehr, Russel Pickford, Elke Dittmann, Brett A. Neilan

Summary: The study found that the marine cyanobacterial nonribosomal peptide synthetase (NRPS) pathway is amenable for the biosynthesis of indolactam variants, with relaxed specificity observed in the native lyngbyatoxin pathway NRPS. Site-directed mutagenesis of the substrate-binding pocket resulted in altered substrate preference, showing relative congruence between in vitro substrate activation and in vivo product formation. Further research with alternative tailoring domains may reveal the true in vivo effects of the mutations introduced.

CHEMBIOCHEM (2022)

Article Environmental Sciences

2-Methylhopanoids in geographically distinct, arid biological soil crusts are primarily cyanobacterial in origin

Tamsyn J. Garby, Matthew Jordan, Verlaine Timms, Malcolm R. Walter, Brett A. Neilan

Summary: Microbial palaeontology relies on stable biomarkers for interpretation, and 2-methylhopanes can serve as a proxy for the presence of cyanobacteria, contributing to our understanding of the emergence of terrestrial life on Earth.

ENVIRONMENTAL MICROBIOLOGY REPORTS (2022)

Article Microbiology

Both Constitutive and Infection-Responsive Secondary Metabolites Linked to Resistance against Austropuccinia psidii (Myrtle Rust) in Melaleuca quinquenervia

Michelle C. Moffitt, Johanna Wong-Bajracharya, Louise S. Shuey, Robert F. Park, Geoff S. Pegg, Jonathan M. Plett

Summary: In this study, untargeted metabolomics was used to explore the chemical defense profiles of different phenotypes within Melaleuca quinquenervia during the early stages of Austropuccinia psidii infection. The results identified different pools of secondary metabolites and provided an improved understanding of key pathways linked to rust resistance, particularly in Melaleuca. This study has significant implications for the management and conservation of Melaleuca species.

MICROORGANISMS (2022)

Article Biotechnology & Applied Microbiology

Heterologous Expression and Biochemical Analysis Reveal a Schizokinen-Based Siderophore Pathway in Leptolyngbya (Cyanobacteria)

Suqin Wang, Leanne A. Pearson, Rabia Mazmouz, Tianzhe Liu, Brett A. Neilan

Summary: Iron availability limits the growth of many microorganisms, particularly those residing in high nutrient-low chlorophyll aquatic environments. Therefore, characterizing iron acquisition pathways in phytoplankton is essential for understanding nutrient cycling in our oceans.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2022)

Article Biology

Bacterial community structure and metabolic potential in microbialite-forming mats from South Australian saline lakes

Suong T. T. Nguyen, David P. Vardeh, Tiffanie M. Nelson, Leanne A. Pearson, Andrew S. Kinsela, Brett A. Neilan

Summary: This study investigates the bacterial communities in microbialite-forming mats in five South Australian lakes, revealing the important role of Cyanobacteria in carbonate precipitation. Although the mat communities differ across lakes, the metabolic pathways involved in carbonate precipitation are highly conserved. Additionally, stress response, quorum sensing, and circadian clock pathways are predicted to play important roles.

GEOBIOLOGY (2022)

Article Biochemistry & Molecular Biology

Biosynthesis of cyanobacterin, a paradigm for furanolide core structure assembly

Paul M. D'Agostino, Catharina J. Seel, Xiaoqi Ji, Tanja Gulder, Tobias A. M. Gulder

Summary: This study elucidates the biosynthetic process of furanolide assembly, providing insights into the function and mechanism of key enzymes. It expands the biocatalytic toolbox for gamma-butyrolactone formation and lays the foundation for targeted discovery and enzymatic synthesis of furanolides.

NATURE CHEMICAL BIOLOGY (2022)

Article Microbiology

Climate dictates microbial community composition and diversity in Australian biological soil crusts (biocrusts)

Angela M. Chilton, Suong T. T. Nguyen, Tiffanie M. Nelson, Leanne A. Pearson, Brett A. Neilan

Summary: This study provides the first detailed description of Australia's biocrust microbiome, revealing its distribution and correlation with climate factors. The dominant bacterial phyla are Cyanobacteria, Proteobacteria, Actinobacteria, Chloroflexi, and Bacteroidetes. The composition of microbes differs between northern and southern regions, which is related to seasonal temperatures and summer rainfall.

ENVIRONMENTAL MICROBIOLOGY (2022)

Article Biotechnology & Applied Microbiology

Streptomyces sp. BV410: Interspecies cross-talk for staurosporine production

Milena Stevanovic, Paul M. D'Agostino, Marija Mojicevic, Tobias A. M. Gulder, Jasmina Nikodinovic-Runic, Sandra Vojnovic

Summary: This study aimed to sequence and analyze the genomes of two co-isolated streptomycetes and investigate their co-cultivation effect on staurosporine production. The results showed that the addition of cell-free supernatant from one strain improved staurosporine production in the other strain, but creating artificial mixed cultures did not have the same effect. The study revealed complex relationships between streptomycetes in soil and highlighted the potential of genome mining for novel bioactive molecules.

JOURNAL OF APPLIED MICROBIOLOGY (2022)

Article Biochemical Research Methods

Discovery and Heterologous Expression of Microginins from Microcystis aeruginosa LEGE 91341

Nadia Eusebio, Raquel Castelo-Branco, Diana Sousa, Marco Preto, Paul D'Agostino, Tobias A. M. Guider, Pedro N. Leao

Summary: A study discovered 12 new variants of microginins in a cyanobacterium, containing uncommon amino acids. Heterologous expression of the relevant biosynthetic gene cluster led to the production of several microginins, providing a pathway for accessing new variants through genome data or pathway engineering.

ACS SYNTHETIC BIOLOGY (2022)

Article Ecology

Hive Transplantation Has Minimal Impact on the Core Gut Microbiome of the Australian Stingless Bee, Tetragonula carbonaria

T. J. T. Mills, T. M. Nelson, L. A. Pearson, B. A. Neilan

Summary: Bacteria in the guts of pollinating insects are crucial for nutrient acquisition, digestion, and resistance to pests and diseases. This study investigates the gut microbiome of the Australian native stingless bee, Tetragonula carbonaria, and the impact of colony transplantation on gut health. Although some differences were observed between bees from natural and manufactured hives, a core microbiome dominated by Lactobacillus spp., unclassified Acetobacteraceae spp., and Bombella spp. was maintained. The study suggests that hive transplantation has a limited negative impact on the overall health and resilience of the colony.

MICROBIAL ECOLOGY (2023)

Article Microbiology

Cyanobacteria as a critical reservoir of the environmental antimicrobial resistome

V. J. Timms, K. A. Hassan, L. A. Pearson, B. A. Neilan

Summary: Antimicrobial resistance (AMR) is a major global health threat, with predictions of 10 million deaths annually by 2050. Cyanobacteria have been found to be a potential reservoir for AMR genes, with these genes found in diverse terrestrial and aquatic habitats.

ENVIRONMENTAL MICROBIOLOGY (2023)

Article Chemistry, Organic

Direct pathway cloning and expression of the radiosumin biosynthetic gene cluster

Xiaodan Ouyang, Paul M. D'Agostino, Matti Wahlsten, Endrews Delbaje, Jouni Jokela, Perttu Permi, Greta Gaiani, Antti Poso, Piia Bartos, Tobias A. M. Gulder, Hannu Koistinen, David P. Fewer

Summary: In this study, a comparative bioinformatic analysis was used to identify radiosumin biosynthetic gene clusters in the genomes of 13 filamentous cyanobacteria. The entire biosynthetic gene cluster was captured and expressed in Escherichia coli. High-resolution liquid chromatography-mass spectrometry, nuclear magnetic resonance spectroscopy, and chemical degradation analysis revealed the chemical structure of novel radiosumins produced by cyanobacteria. Radiosumin C was found to inhibit human trypsin isoforms selectively.

ORGANIC & BIOMOLECULAR CHEMISTRY (2023)

Review Biochemistry & Molecular Biology

Highlights of biosynthetic enzymes and natural products from symbiotic cyanobacteria

Paul M. D'Agostino

Summary: Cyanobacteria are known for their unique natural product scaffolds and play significant ecological roles in various symbiotic relationships. However, the lack of genomic data has limited the discovery of symbiotic cyanobacterial natural products, although recent advancements in (meta-)genomic sequencing have improved these efforts. This article highlights selected examples of symbiotic cyanobacterial-derived natural products and their biosynthetic pathways, as well as identifies gaps in knowledge regarding the formation of characteristic structural motifs. The continued rise of (meta-)genomic next-generation sequencing is expected to lead to exciting discoveries in the future.

NATURAL PRODUCT REPORTS (2023)

No Data Available