4.7 Article

Low-rank network decomposition reveals structural characteristics of small-world networks

Journal

PHYSICAL REVIEW E
Volume 92, Issue 6, Pages -

Publisher

AMER PHYSICAL SOC
DOI: 10.1103/PhysRevE.92.062822

Keywords

-

Funding

  1. Shanghai Rising-Star Program [15QA1402600]
  2. NSF [DMS-1009575, NSFC-31571071]
  3. SJTU-UM Collaborative Research Program
  4. NYU Abu Dhabi Institute [G1301]
  5. [NSFC-91230202]
  6. [14JC1403800]
  7. [15JC1400104]

Ask authors/readers for more resources

Small-world networks occur naturally throughout biological, technological, and social systems. With their prevalence, it is particularly important to prudently identify small-world networks and further characterize their unique connection structure with respect to network function. In this work we develop a formalism for classifying networks and identifying small-world structure using a decomposition of network connectivity matrices into low-rank and sparse components, corresponding to connections within clusters of highly connected nodes and sparse interconnections between clusters, respectively. We show that the network decomposition is independent of node indexing and define associated bounded measures of connectivity structure, which provide insight into the clustering and regularity of network connections. While many existing network characterizations rely on constructing benchmark networks for comparison or fail to describe the structural properties of relatively densely connected networks, our classification relies only on the intrinsic network structure and is quite robust with respect to changes in connection density, producing stable results across network realizations. Using this framework, we analyze several real-world networks and reveal new structural properties, which are often indiscernible by previously established characterizations of network connectivity.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Neurosciences

The impact of spike-frequency adaptation on balanced network dynamics

Victor J. Barranca, Han Huang, Sida Li

COGNITIVE NEURODYNAMICS (2019)

Article Mathematical & Computational Biology

Network structure and input integration in competing firing rate models for decision-making

Victor J. Barranca, Han Huang, Genji Kawakita

JOURNAL OF COMPUTATIONAL NEUROSCIENCE (2019)

Article Mathematical & Computational Biology

Balanced Active Core in Heterogeneous Neuronal Networks

Qing-long L. Gu, Songting Li, Wei P. Dai, Douglas Zhou, David Cai

FRONTIERS IN COMPUTATIONAL NEUROSCIENCE (2019)

Article Mechanics

Modulation-resonance mechanism for surface waves in a two-layer fluid system

Shixiao W. Jiang, Gregor Kovacic, Douglas Zhou, David Cai

JOURNAL OF FLUID MECHANICS (2019)

Article Neurosciences

Neural networks of different species, brain areas and states can be characterized by the probability polling state

Zhi-Qin John Xu, Xiaowei Gu, Chengyu Li, David Cai, Douglas Zhou, David W. McLaughlin

EUROPEAN JOURNAL OF NEUROSCIENCE (2020)

Article Behavioral Sciences

Hive minded: like neurons, honey bees collectively integrate negative feedback to regulate decisions

Talia Borofsky, Victor J. Barranca, Rebecca Zhou, Dora von Trentini, Robert L. Broadrup, Christopher Mayack

ANIMAL BEHAVIOUR (2020)

Article Mathematics, Applied

The extended Granger causality analysis for Hodgkin-Huxley neuronal models

Hong Cheng, David Cai, Douglas Zhou

CHAOS (2020)

Article Neurosciences

Network mechanism for insect olfaction

Pamela B. Pyzza, Katherine A. Newhall, Gregor Kovacic, Douglas Zhou, David Cai

Summary: Research has shown that there are similar dynamical behaviors in the early olfactory pathway responses across different species when exposed to odors, which may be influenced by the time scales of fast excitation and fast and slow inhibition. By designing an ideal model and conducting numerical simulations, this hypothesis can be verified, and a firing-rate model can be derived to extract the structure of slow transition.

COGNITIVE NEURODYNAMICS (2021)

Article Computer Science, Artificial Intelligence

Neural network learning of improved compressive sensing sampling and receptive field structure

Victor J. Barranca

Summary: This study introduces a neural network framework for learning improved CS sampling based on the intrinsic structure present in classes of training signals, resulting in better CS signal reconstructions compared to uniformly random sampling. The learning methodology is purely data-driven and does not assume knowledge of any specific signal statistics.

NEUROCOMPUTING (2021)

Article Neurosciences

Functional Implications of Dale's Law in Balanced Neuronal Network Dynamics and Decision Making

Victor J. Barranca, Asha Bhuiyan, Max Sundgren, Fangzhou Xing

Summary: This study investigates the functional implications of network model dynamics that violate Dale's law, which states that a neuron transmits the same set of neurotransmitters at all of its post-synaptic connections. The results show that a single population network violating Dale's law can maintain balanced dynamics and produce effective decision-making dynamics in two competing pools of neurons. The study suggests that the one-population network exhibits more robust balanced activity for systems with fewer computational units, while the two-population network responds more rapidly to temporal variations in network inputs.

FRONTIERS IN NEUROSCIENCE (2022)

Article Mathematical & Computational Biology

Reconstruction of sparse recurrent connectivity and inputs from the nonlinear dynamics of neuronal networks

Victor J. Barranca

Summary: This study develops a novel method for reverse-engineering the connectivity matrix of neuronal networks by utilizing the sparsity of neuronal connections. The researchers efficiently reconstruct the network connectivity and recover high dimensional natural stimuli from neuronal dynamics.

JOURNAL OF COMPUTATIONAL NEUROSCIENCE (2023)

Article Physics, Multidisciplinary

Improved effective linearization of nonlinear Schrodinger waves by increasing nonlinearity

Katelyn Plaisier Leisman, Douglas Zhou, J. W. Banks, Gregor Kovacic, David Cai

Summary: A robust and spatiotemporally disordered family of waves has been found, in which waves with increasing amplitudes gradually evolve into weakly coupled collections of plane waves over long timescales. The amount of energy contained in their coupling decays to zero as the wave amplitude increases.

PHYSICAL REVIEW RESEARCH (2022)

Article Mathematics, Applied

Data-Driven Reconstruction and Encoding of Sparse Stimuli across Convergent Sensory Layers from Downstream Neuronal Network Dynamics

Victor J. Barranca, Yolanda Hu, Zoe Porterfield, Samuel Rothstein, Alex Xuan

Summary: This research explores the mechanism for information preservation in neuronal networks across downstream layers of the brain by fitting a linear input-output mapping based on the widespread linearity of individual neuronal responses to strong ramped artificial inputs. Through analyzing different dynamics of neuronal network models and applying compressive sensing theory, sparse stimuli can be reconstructed efficiently using downstream neuronal firing rates, even in cases where theoretical analysis is challenging or governing equations are unknown.

SIAM JOURNAL ON APPLIED DYNAMICAL SYSTEMS (2021)

Article Mathematics, Applied

THE ROLE OF SPARSITY IN INVERSE PROBLEMS FOR NETWORKS WITH NONLINEAR DYNAMICS

Victor J. Barranca, Gregor Kovacic, Douglas Zhou

COMMUNICATIONS IN MATHEMATICAL SCIENCES (2019)

Article Physics, Fluids & Plasmas

Maximum entropy principle analysis in network systems with short-time recordings

Zhi-Qin John Xu, Jennifer Crodelle, Douglas Zhou, David Cai

PHYSICAL REVIEW E (2019)

No Data Available