4.6 Article

Mechanism and Dynamic Correlation Effects in Cycloaddition Reactions of Singlet Difluorocarbene to Alkenes and Disilene

Journal

JOURNAL OF PHYSICAL CHEMISTRY A
Volume 113, Issue 36, Pages 9852-9860

Publisher

AMER CHEMICAL SOC
DOI: 10.1021/jp901553y

Keywords

-

Funding

  1. MEXT of Japan

Ask authors/readers for more resources

Mechanisms of the cycloaddition reactions of singlet difluorocarbene (CF2) to alkenes and disilene were studied using CASSCF, MR-MP2, CR-CC(2,3), and UB3LYP methods in combination with basis sets up to 6-311++G(3d,p). The CASSCF(4,4) energies suggest that the cycloadditions all follow the stepwise mechanism. However, energies calculated using the MR-MP2(4,4) and CR-CC(2,3) methods in combination with the 6-311G(d) or larger basis sets consistently show that the reactions follow a concerted mechanism. The stepwise mechanisms predicted at the CASSCF level are artificial because of their neglect of dynamic electron correlation effects. The importance of dynamic electron correlation in determining the mechanistic nature of the reactions is explained through knowledge of the reacting system's geometries and charges along the reaction path.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Physical

Density Functional Theory Mechanistic Insight into the Peroxidase- and Oxidase-like Activities of Nanoceria

Zhenzhen Wang, Xiaomei Shen, Xingfa Gao

Summary: Using density functional theory calculations, the study reveals the crucial role of oxygen vacancies in nanoceria catalysis and the dependence of nanoceria activity on the presence of oxygen vacancies. The results help explain the enzyme-like catalytic activities of nanoceria and may guide the future design of nanoceria-based enzyme mimics.

JOURNAL OF PHYSICAL CHEMISTRY C (2021)

Article Multidisciplinary Sciences

Accelerated discovery of superoxide-dismutase nanozymes via high-throughput computational screening

Zhenzhen Wang, Jiangjiexing Wu, Jia-Jia Zheng, Xiaomei Shen, Liang Yan, Hui Wei, Xingfa Gao, Yuliang Zhao

Summary: The study uses density functional theory calculations to investigate the principles behind the SOD-like catalytic activity of nanomaterials, proposing energy level and adsorption energy principles for quantitatively describing the activity. These principles were validated through experiments on metal-organic frameworks and can be easily implemented in computer programs for screening NMs with intrinsic SOD-like activity. A general predicting theory for superoxide-dismutase mimicking nanomaterials is currently lacking.

NATURE COMMUNICATIONS (2021)

Review Chemistry, Multidisciplinary

Reaction Mechanisms and Kinetics of Nanozymes: Insights from Theory and Computation

Xiaomei Shen, Zhenzhen Wang, Xuejiao J. Gao, Xingfa Gao

Summary: Nanozymes are inorganic nanomaterials with enzyme-like catalytic activities. The research on nanozymes is a hot topic in interdisciplinary science involving materials, chemistry, and biology. DFT calculations have played an increasingly important role in exploring the mechanisms and kinetics of nanozymes by providing atomistic-level insights into the microscopic processes. This review summarizes the research progress and focuses on the computational studies that complement experimental findings and promote the understanding of nanozyme mechanisms and kinetics.

ADVANCED MATERIALS (2023)

Article Multidisciplinary Sciences

Deciphering the catalytic mechanism of superoxide dismutase activity of carbon dot nanozyme

Wenhui Gao, Jiuyang He, Lei Chen, Xiangqin Meng, Yana Ma, Liangliang Cheng, Kangsheng Tu, Xingfa Gao, Cui Liu, Mingzhen Zhang, Kelong Fan, Dai-Wen Pang, Xiyun Yan

Summary: We report a carbon dot (C-dot) superoxide dismutase (SOD) nanozyme with a catalytic activity comparable to that of natural enzymes. The SOD-like activity of C-dot nanozyme relies on specific chemical modifications and conjugated carbonyl groups for binding and electron transfer. Furthermore, the C-dot SOD nanozymes exhibit intrinsic targeting ability to oxidation-damaged cells and effectively protect neuron cells in the ischemic stroke mouse model.

NATURE COMMUNICATIONS (2023)

Article Chemistry, Physical

Mechanism and Kinetics-Guided Discovery of Nanometal Scissors to Cut Phosphoester Bonds

Qiao-Zhi Li, Huizhen Fan, Zhenzhen Wang, Jia-Jia Zheng, Kelong Fan, Xiyun Yan, Xingfa Gao

Summary: Currently, the research on catalysts that catalytically cut phos-phoester bonds using nanomaterials (NMs) is mainly limited to NMs consisting of high-valent metal ions, and a universal theory guiding the discovery of such NM catalysts is still lacking. This study investigates the mechanisms, kinetics, activity descriptors, and theoretical models for predicting the catalytic activities of arbitrary metal and metal-oxide NMs through density functional theory calculations and experiments. The results provide a systematic understanding of previously reported NM catalysts and theoretical guidelines for further optimization and screening of these catalysts.

ACS CATALYSIS (2023)

Article Engineering, Biomedical

Clear-Box Machine Learning for Virtual Screening of 2D Nanozymes to Target Tumor Hydrogen Peroxide

Xuejiao J. Gao, Jun Yan, Jia-Jia Zheng, Shengliang Zhong, Xingfa Gao

Summary: In this study, a method for predicting the catalytic activities of materials towards tumor therapy was developed. This method combines adsorption-energy-based descriptors and criteria with density functional theory calculations and machine learning models. The method allows for efficient screening of 2D materials for catalytic therapy and will greatly contribute to the development of catalytic nanomaterials for medical applications.

ADVANCED HEALTHCARE MATERIALS (2023)

Article Chemistry, Multidisciplinary

Surface Ligand Engineering Ruthenium Nanozyme Superior to Horseradish Peroxidase for Enhanced Immunoassay

Huizhen Fan, Jiajia Zheng, Jiaying Xie, Juewen Liu, Xingfa Gao, Xiyun Yan, Kelong Fan, Lizeng Gao

Summary: Nanozymes have great potential as alternatives to natural enzymes, but their practical use is limited by their low catalytic activity compared to natural enzymes. This study employed a surface engineering strategy using charge-transferrable ligands, such as polystyrene sulfonate (PSS), to improve the specific activity of Ru nanozymes. The modified Ru nanozyme exhibited a peroxidase-like specific activity double that of horseradish peroxidase. The modified Ru-peroxidase nanozyme was successfully used to develop an immunoassay with significantly increased detection sensitivity compared to traditional enzyme-linked immunosorbent assay.

ADVANCED MATERIALS (2023)

Article Chemistry, Multidisciplinary

Conjugated Nonplanar Copper-Catecholate Conductive Metal-Organic Frameworks via Contorted Hexabenzocoronene Ligands for Electrical Conduction

Guolong Xing, Jingjuan Liu, Yi Zhou, Shuai Fu, Jia-Jia Zheng, Xi Su, Xingfa Gao, Osamu Terasaki, Mischa Bonn, Hai I. Wang, Long Chen

Summary: Conductive metal-organic frameworks (c-MOFs) with excellent electrical conductivities and charge transport properties were synthesized using contorted hexabenzocoronene (c-HBC) derivatives as nonplanar and highly soluble ligands. Three c-MOFs with different geometries and packing modes were obtained, among which c-HBC-12O-Cu exhibited the highest intrinsic electrical conductivity and all c-HBC-based c-MOFs showed high charge carrier mobilities. This work provides a systematic and modular approach to enhance the structure and charge transport properties of c-MOFs using nonplanar and highly soluble ligands.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Multidisciplinary Sciences

A new capacity of gut microbiota: Fermentation of engineered inorganic carbon nanomaterials into endogenous organic metabolites

Xuejing Cui, Xiaoyu Wang, Xueling Chang, Lin Bao, Junguang Wu, Zhiqiang Tan, Jinmei Chen, Jiayang Li, Xingfa Gao, Pu Chun Ke, Chunying Chen, Catherine Murphy

Summary: Carbon-based nanomaterials (CNMs) have been found in humans, and their integration into the endogenous carbon flow through the gut microbiota has been uncovered. The gut microbiota ferments CNMs, incorporating inorganic carbon into organic butyrate. Butyrate-producing bacteria prefer CNMs as their carbon source, and excessive butyrate derived from microbial CNMs fermentation affects the function of intestinal stem cells. This study highlights the need to assess the transformation of CNMs and their health risk via the gut-centric physiological and anatomical pathways.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2023)

Article Chemistry, Physical

Remote substituent effects on catalytic activity of metal-organic frameworks: a linker orbital energy model

Zhenzhen Wang, Huan Meng, Xuejiao J. Gao, Jia-Jia Zheng, Xingfa Gao

Summary: The Hammett equation is commonly used for theoretical modeling of the substituent effects on catalytic activities of metal-organic frameworks (MOFs). However, its application to MOF catalysts faces challenges due to unknown transferability of empirical parameters. In this study, a linker orbital energy model is proposed, which offers a simple way to estimate the remote electronic substituent effects on MOF catalysis and demonstrates its general applicability to MOFs based on extensive literature review. The model can be utilized for designing the catalytic activities of metal nodes in MOFs by manipulating the electronic properties of linkers and substituents.

NPJ COMPUTATIONAL MATERIALS (2023)

Review Chemistry, Multidisciplinary

Catalytic Signal Transduction Theory Enabled Virtual Screening of Nanomaterials for Medical Functions

Xuejiao J. Gao, Yuliang Zhao, Xingfa Gao

Summary: Developing biocompatible catalytic nanomaterials to target cancer reactive oxygen species (ROS) has provided a promising alternative chemotherapy strategy. Despite progress in synthesizing inorganic nanomaterials with potential therapeutic functions, the chemicobiological mechanisms underlying ROS-targeted catalysis and subsequent cancer therapeutic functions of nanomaterials remain elusive. This study proposes catalytic signal transduction theory to bridge the gap between catalytic activities and medical functions of inorganic nanomaterials, providing theoretical tools for the design and screening of candidate nanomaterials for cancer therapy.

ACCOUNTS OF CHEMICAL RESEARCH (2023)

Article Chemistry, Multidisciplinary

Nano-Impact Electrochemistry Reveals Kinetics Information of Metal-Ion Battery Materials with Multiple Redox Centers

Wei Xu, Jia-Jia Zheng, Yu-An Li, Xingfa Gao, Xiaobo Ji, Yi-Ge Zhou

Summary: The electrochemical processes of individual PB particles were investigated using nano-impact electrochemistry, revealing the kinetic mechanism of each oxidation/reduction reaction through theoretical simulation. The partially contradictory conclusion between single-particle analysis and the ensemble-averaged measurement was discussed. These findings contribute to a better understanding of the electrochemical processes of cathode materials with multiple redox centers and facilitate the development of effective strategies to optimize these materials.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2023)

Article Chemistry, Multidisciplinary

Intrinsic Strain-Mediated Ultrathin Ceria Nanoantioxidant

Cong Liu, Lin Gui, Jia-Jia Zheng, Yong-Qiang Xu, Benli Song, Li Yi, Yijiang Jia, Ayijiang Taledaohan, Yuji Wang, Xingfa Gao, Zeng-Ying Qiao, Hao Wang, Zhiyong Tang

Summary: Metaloxide nanozymes have emerged as the most promising candidates for treating oxidative stress-mediated disorders, but their current efficacy is insufficient. This study introduces an intrinsic strain-mediated ultrathin ceria nanoantioxidant, which exhibits enhanced SOD-mimetic and total antioxidant activities. In vivo experiments demonstrate that these ultrathin ceria nanoplates can significantly improve the treatment of ischemic stroke, outperforming the commonly used drug edaravone.

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2023)

Article Chemistry, Multidisciplinary

A new strategy for hyperconjugative antiaromatic compounds utilizing negative charges: a dibenzo[b,f]silepinyl dianion

Shotaro Ito, Youichi Ishii, Kazuya Ishimura, Takuya Kuwabara

Summary: A new strategy for hyperconjugative antiaromatic compounds was proposed, with experimental and theoretical evidence supporting the hyperconjugative antiaromaticity of the newly designed compound.

CHEMICAL COMMUNICATIONS (2021)

Article Chemistry, Physical

A density functional theory study on the underwater adhesion of catechol onto a graphite surface

Ramesh Kumar Chitumalla, Kiduk Kim, Xingfa Gao, Joonkyung Jang

Summary: The study reveals that catechol adheres onto a wet graphite surface mainly through pi-pi stacking and hydrogen bonds with water molecules, with significant charge transfer observed. These findings contribute to understanding the water-resistant adhesion mechanism of catechol on different types of surfaces.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2021)

No Data Available