Prioritization of Candidate Genes for Periodontitis Using Multiple Computational Tools

Exploring the genetic basis of chronic periodontitis: a genome-wide association study

(2013) K. Divaris et al.   HUMAN MOLECULAR GENETICS

An unbiased evaluation of gene prioritization tools

(2012) Daniela Börnigen et al.   BIOINFORMATICS

GPEC: A Cytoscape plug-in for random walk-based gene prioritization and biomedical evidence collection

(2012) Duc-Hau Le et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

MMP3 and TIMP1 variants contribute to chronic periodontitis and may be implicated in disease progression

(2012) Ariadne Letra et al.   JOURNAL OF CLINICAL PERIODONTOLOGY

Role of CD44 in tumour progression and strategies for targeting

(2012) Lalit Mohan Negi et al.   JOURNAL OF DRUG TARGETING

Computational tools for prioritizing candidate genes: boosting disease gene discovery

(2012) Yves Moreau et al.   NATURE REVIEWS GENETICS

Recent approaches to the prioritization of candidate disease genes

(2012) Nadezhda T. Doncheva et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

“Guilt by Association” Is the Exception Rather Than the Rule in Gene Networks

(2012) Jesse Gillis et al.   PLoS Computational Biology

Prioritization of candidate genes for attention deficit hyperactivity disorder by computational analysis of multiple data sources

(2012) Suhua Chang et al.   Protein & Cell

A novel network-based method for measuring the functional relationship between gene sets

(2011) Qianghu Wang et al.   BIOINFORMATICS

Expression of toll-like receptors 2, 4 and 9 is increased in gingival tissue from patients with type 2 diabetes and chronic periodontitis

(2011) N. R. Rojo-Botello et al.   JOURNAL OF PERIODONTAL RESEARCH

A novel method to quantify gene set functional association based on gene ontology

(2011) S. Lv et al.   Journal of the Royal Society Interface

Signal- and Development-Dependent Alternative Splicing of LEF1 in T Cells Is Controlled by CELF2

(2011) M. J. Mallory et al.   MOLECULAR AND CELLULAR BIOLOGY

Gene polymorphisms and periodontitis

(2011) Jincai Zhang et al.   PERIODONTOLOGY 2000

In Silico Gene Prioritization by Integrating Multiple Data Sources

(2011) Yixuan Chen et al.   PLoS One

Replication of the association of chromosomal region 9p21.3with generalized aggressive periodontitis (gAgP) using an independent case-control cohort

(2010) Florian D Ernst et al.   BMC Medical Genetics

Genotator: A disease-agnostic tool for genetic annotation of disease

(2010) Dennis P Wall et al.   BMC Medical Genomics

Evidences of the cooperative role of the chemokines CCL3, CCL4 and CCL5 and its receptors CCR1+ and CCR5+ in RANKL+ cell migration throughout experimental periodontitis in mice

(2010) Carlos Eduardo Repeke et al.   BONE

A guide to web tools to prioritize candidate genes

(2010) L.-C. Tranchevent et al.   BRIEFINGS IN BIOINFORMATICS

Transcription factor Ets-1 in cytokine and chemokine gene regulation

(2010) Lisa Russell et al.   CYTOKINE

Salivary-Soluble CD44 Levels in Smokers and Non-Smokers With Chronic Periodontitis: A Pilot Study

(2010) Noha Ghallab et al.   JOURNAL OF PERIODONTOLOGY

Computational candidate gene prioritization for venous thrombosis

(2010) C. Y. VOSSEN et al.   JOURNAL OF THROMBOSIS AND HAEMOSTASIS

Tea polyphenols inhibit IL-6 production in tumor necrosis factor superfamily 14-stimulated human gingival fibroblasts

(2010) Yoshitaka Hosokawa et al.   MOLECULAR NUTRITION & FOOD RESEARCH

An Open Access Database of Genome-wide Association Results

(2009) Andrew D Johnson et al.   BMC Medical Genetics

Subgingival bacterial colonization profiles correlate with gingival tissue gene expression

(2009) Panos N Papapanou et al.   BMC MICROBIOLOGY

A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis

(2009) Arne S. Schaefer et al.   HUMAN MOLECULAR GENETICS

LPS induces GROα chemokine production via NF-κB in oral fibroblasts

(2009) D. Jönsson et al.   INFLAMMATION RESEARCH

Martini: using literature keywords to compare gene sets

(2009) Theodoros G. Soldatos et al.   NUCLEIC ACIDS RESEARCH

Identification of a Shared Genetic Susceptibility Locus for Coronary Heart Disease and Periodontitis

(2009) Arne S. Schaefer et al.   PLoS Genetics

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Association of genetic variations in the CSF2 and CSF3 genes with lung function in smoking-induced COPD

(2008) J-Q. He et al.   EUROPEAN RESPIRATORY JOURNAL

Identifying disease-causal genes using Semantic Web-based representation of integrated genomic and phenomic knowledge

(2008) Ranga Chandra Gudivada et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Autoantibodies to β1-adrenoceptors in human chronic periodontitis induce overexpression of fibroblast CD40 and trigger prostaglandin E2generation

(2008) L. Sterin-Borda et al.   JOURNAL OF PERIODONTAL RESEARCH

Bioinformatic Prediction of Leader Genes in Human Periodontitis

(2008) Ugo Covani et al.   JOURNAL OF PERIODONTOLOGY

Rethinking Periodontal Inflammation

(2008) Steven Offenbacher et al.   JOURNAL OF PERIODONTOLOGY

Transcriptomes in Healthy and Diseased Gingival Tissues

(2008) Ryan T Demmer et al.   JOURNAL OF PERIODONTOLOGY

Genes to Diseases (G2D) Computational Method to Identify Asthma Candidate Genes

(2008) Karine Tremblay et al.   PLoS One