- Home
- Publications
- Publication Search
- Publication Details
Title
NANOGOLD decorated by pHLIP peptide: comparative force field study
Authors
Keywords
-
Journal
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
Volume 17, Issue 19, Pages 12648-12660
Publisher
Royal Society of Chemistry (RSC)
Online
2015-04-09
DOI
10.1039/c5cp01136a
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Targeting acidity in diseased tissues: Mechanism and applications of the membrane-inserting peptide, pHLIP
- (2015) John C. Deacon et al. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
- Lipid Headgroups Modulate Membrane Insertion of pHLIP Peptide
- (2015) Alexander Kyrychenko et al. BIOPHYSICAL JOURNAL
- Atomistic Simulations of Coating of Silver Nanoparticles with Poly(vinylpyrrolidone) Oligomers: Effect of Oligomer Chain Length
- (2015) Alexander Kyrychenko et al. Journal of Physical Chemistry C
- Atomistic simulations of anionic Au144(SR)60 nanoparticles interacting with asymmetric model lipid membranes
- (2014) Elena Heikkilä et al. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
- Comparative Study of Materials-Binding Peptide Interactions with Gold and Silver Surfaces and Nanostructures: A Thermodynamic Basis for Biological Selectivity of Inorganic Materials
- (2014) J. Pablo Palafox-Hernandez et al. CHEMISTRY OF MATERIALS
- Lanthanide-coated gold nanoparticles for biomedical applications
- (2014) David J. Lewis et al. COORDINATION CHEMISTRY REVIEWS
- Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations
- (2014) Stefano Piana et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Benchmarking of Force Fields for Molecule–Membrane Interactions
- (2014) Markéta Paloncýová et al. Journal of Chemical Theory and Computation
- Residue-Specific Force Field Based on the Protein Coil Library. RSFF1: Modification of OPLS-AA/L
- (2014) Fan Jiang et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Aqueous Amino Acids and Proteins Near the Surface of Gold in Hydrophilic and Hydrophobic Force Fields
- (2014) Grzegorz Nawrocki et al. Journal of Physical Chemistry C
- Folding of Fourteen Small Proteins with a Residue-Specific Force Field and Replica-Exchange Molecular Dynamics
- (2014) Fan Jiang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Folding Simulations for Proteins with Diverse Topologies Are Accessible in Days with a Physics-Based Force Field and Implicit Solvent
- (2014) Hai Nguyen et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Theoretical Description of the Role of Halides, Silver, and Surfactants on the Structure of Gold Nanorods
- (2014) Neyvis Almora-Barrios et al. NANO LETTERS
- Understanding Interactions of Functionalized Nanoparticles with Proteins: A Case Study on Lactate Dehydrogenase
- (2014) Oliver Stueker et al. Small
- Are Current Atomistic Force Fields Accurate Enough to Study Proteins in Crowded Environments?
- (2014) Drazen Petrov et al. PLoS Computational Biology
- Targeting diseased tissues by pHLIP insertion at low cell surface pH
- (2014) Oleg A. Andreev et al. Frontiers in Physiology
- Evidence of energy transfer from tryptophan to BSA/HSA protected gold nanoclusters
- (2014) Sangram Raut et al. Methods and Applications in Fluorescence
- Biomolecular Recognition Principles for Bionanocombinatorics: An Integrated Approach To Elucidate Enthalpic and Entropic Factors
- (2013) Zhenghua Tang et al. ACS Nano
- Physicochemical Properties of Nanoparticles Regulate Translocation across Pulmonary Surfactant Monolayer and Formation of Lipoprotein Corona
- (2013) Guoqing Hu et al. ACS Nano
- Insights into cell entry and intracellular trafficking of peptide and protein drugs provided by electron microscopy
- (2013) Helerin Margus et al. ADVANCED DRUG DELIVERY REVIEWS
- A Controlled-Release Nanocarrier with Extracellular pH Value Driven Tumor Targeting and Translocation for Drug Delivery
- (2013) Zilong Zhao et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- GolP-CHARMM: First-Principles Based Force Fields for the Interaction of Proteins with Au(111) and Au(100)
- (2013) Louise B. Wright et al. Journal of Chemical Theory and Computation
- Improved Generalized Born Solvent Model Parameters for Protein Simulations
- (2013) Hai Nguyen et al. Journal of Chemical Theory and Computation
- CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data
- (2013) Jing Huang et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Conformational Behavior of Genetically-Engineered Dodecapeptides as a Determinant of Binding Affinity for Gold.
- (2013) Stefano Corni et al. Journal of Physical Chemistry C
- First-Principles-Based Force Field for the Interaction of Proteins with Au(100)(5 × 1): An Extension of GolP-CHARMM
- (2013) Louise B. Wright et al. Journal of Physical Chemistry C
- Engineering Gold Nanoparticle Interaction by PAMAM Dendrimer
- (2013) Taraknath Mandal et al. Journal of Physical Chemistry C
- Structure of Mixed-Monolayer-Protected Nanoparticles in Aqueous Salt Solution from Atomistic Molecular Dynamics Simulations
- (2013) Reid C. Van Lehn et al. Journal of Physical Chemistry C
- pH dependent transfer of nano-pores into membrane of cancer cells to induce apoptosis
- (2013) Dayanjali Wijesinghe et al. Scientific Reports
- pH-Controlled Delivery of Nanoparticles into Tumor Cells
- (2013) Liang Han et al. Advanced Healthcare Materials
- Detecting and Destroying Cancer Cells in More than One Way with Noble Metals and Different Confinement Properties on the Nanoscale
- (2012) Erik C. Dreaden et al. ACCOUNTS OF CHEMICAL RESEARCH
- Designing Nanoparticle Translocation through Membranes by Computer Simulations
- (2012) Hong-ming Ding et al. ACS Nano
- Spectroscopic investigation of the interactions between gold nanoparticles and bovine serum albumin
- (2012) XiuJuan Shi et al. CHINESE SCIENCE BULLETIN
- Critical Assessment of Current Force Fields. Short Peptide Test Case
- (2012) Jiří Vymětal et al. Journal of Chemical Theory and Computation
- Atomistic Simulations of Functional Au144(SR)60 Gold Nanoparticles in Aqueous Environment
- (2012) Elena Heikkilä et al. Journal of Physical Chemistry C
- Supercrystals of DNA-Functionalized Gold Nanoparticles: A Million-Atom Molecular Dynamics Simulation Study
- (2012) Van A. Ngo et al. Journal of Physical Chemistry C
- Fluorescence Probing of Thiol-Functionalized Gold Nanoparticles: Is Alkylthiol Coating of a Nanoparticle as Hydrophobic as Expected?
- (2012) Alexander Kyrychenko et al. Journal of Physical Chemistry C
- Modeling the Crystallization of Spherical Nucleic Acid Nanoparticle Conjugates with Molecular Dynamics Simulations
- (2012) Ting I.N.G. Li et al. NANO LETTERS
- pH (low) insertion peptide (pHLIP) targets ischemic myocardium
- (2012) E. A. Sosunov et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- pHLIP peptide targets nanogold particles to tumors
- (2012) L. Yao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- pH-controlled delivery of luminescent europium coated nanoparticles into platelets
- (2012) A. Davies et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multifunctional Nanoparticles: Cost Versus Benefit of Adding Targeting and Imaging Capabilities
- (2012) Z. Cheng et al. SCIENCE
- Influence of the Shape of Nanostructured Metal Surfaces on Adsorption of Single Peptide Molecules in Aqueous Solution
- (2012) Jie Feng et al. Small
- Beating cancer in multiple ways using nanogold
- (2011) Erik C. Dreaden et al. CHEMICAL SOCIETY REVIEWS
- The golden age: gold nanoparticles for biomedicine
- (2011) Erik C. Dreaden et al. CHEMICAL SOCIETY REVIEWS
- Gold Nanoparticle/Polymer Interfaces: All Atom Structures from Molecular Dynamics Simulations
- (2011) G. Milano et al. Journal of Physical Chemistry C
- Simulation Study of Aggregations of Monolayer-Protected Gold Nanoparticles in Solvents
- (2011) Jia-Qi Lin et al. Journal of Physical Chemistry C
- Crystallographic Recognition Controls Peptide Binding for Bio-Based Nanomaterials
- (2011) Ryan Coppage et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- The Influence of Amino Acid Sequence and Functionality on the Binding Process of Peptides onto Gold Surfaces
- (2011) Jing Yu et al. LANGMUIR
- Preparation, structure, and a coarse-grained molecular dynamics model for dodecanethiol-stabilized gold nanoparticles
- (2011) Alexander Kyrychenko et al. Computational and Theoretical Chemistry
- Penetration of Lipid Membranes by Gold Nanoparticles: Insights into Cellular Uptake, Cytotoxicity, and Their Relationship
- (2010) Jiaqi Lin et al. ACS Nano
- A Quantitative, Real-Time Assessment of Binding of Peptides and Proteins to Gold Surfaces
- (2010) Ori Cohavi et al. CHEMISTRY-A EUROPEAN JOURNAL
- The Conformations of Amino Acids on a Gold(111) Surface
- (2010) Martin Hoefling et al. CHEMPHYSCHEM
- Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models
- (2010) Pär Bjelkmar et al. Journal of Chemical Theory and Computation
- Atomistic Simulation Study of Striped Phase Separation in Mixed-Ligand Self-Assembled Monolayer Coated Nanoparticles
- (2010) Pradip Kr. Ghorai et al. Journal of Physical Chemistry C
- Using DNA to Link Gold Nanoparticles, Polymers, and Molecules: A Theoretical Perspective
- (2010) One-Sun Lee et al. Journal of Physical Chemistry Letters
- Nuclear Targeting of Gold Nanoparticles in Cancer Cells Induces DNA Damage, Causing Cytokinesis Arrest and Apoptosis
- (2010) Bin Kang et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Interaction of Amino Acids with the Au(111) Surface: Adsorption Free Energies from Molecular Dynamics Simulations
- (2010) Martin Hoefling et al. LANGMUIR
- Challenges in protein-folding simulations
- (2010) Peter L. Freddolino et al. Nature Physics
- pH (low) insertion peptide (pHLIP) inserts across a lipid bilayer as a helix and exits by a different path
- (2010) O. A. Andreev et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Molecular Dynamics Simulation of the Stability-Limited Growth Mechanism of Peptide-Mediated Gold-Nanoparticle Synthesis
- (2010) Jing Yu et al. Small
- Investigating the Specificity of Peptide Adsorption on Gold Using Molecular Dynamics Simulations
- (2009) Ana Vila Verde et al. BIOMACROMOLECULES
- Bilayer Interactions of pHLIP, a Peptide that Can Deliver Drugs and Target Tumors
- (2008) Manuela Zoonens et al. BIOPHYSICAL JOURNAL
- GolP: An atomistic force-field to describe the interaction of proteins with Au(111) surfaces in water
- (2008) F. Iori et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Accurate Simulation of Surfaces and Interfaces of Face-Centered Cubic Metals Using 12−6 and 9−6 Lennard-Jones Potentials
- (2008) Hendrik Heinz et al. Journal of Physical Chemistry C
- Competing Adsorption between Hydrated Peptides and Water onto Metal Surfaces: From Electronic to Conformational Properties
- (2008) Luca M. Ghiringhelli et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Energetics of peptide (pHLIP) binding to and folding across a lipid bilayer membrane
- (2008) Y. K. Reshetnyak et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation
- (2007) Berk Hess Journal of Chemical Theory and Computation
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now