Energetic and topological determinants of a phosphorylation-induced disorder-to-order protein conformational switch

Are Protein Folding Intermediates the Evolutionary Consequence of Functional Constraints?

(2015) Athi N. Naganathan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations

(2015) Anna Jean Wirth et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Imprints of function on the folding landscape: functional role for an intermediate in a conserved eukaryotic binding protein

(2015) Sneha Munshi et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Merging molecular mechanism and evolution: theory and computation at the interface of biophysics and evolutionary population genetics

(2014) Adrian WR Serohijos et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Evidence for the Sequential Folding Mechanism in RNase H from an Ensemble-Based Model

(2014) Abhishek Narayan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Folding of an intrinsically disordered protein by phosphorylation as a regulatory switch

(2014) Alaji Bah et al.   NATURE

Structural and sequence features of two residue turns in beta-hairpins

(2014) Bharat Madan et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The Conformational Landscape of an Intrinsically Disordered DNA-Binding Domain of a Transcription Regulator

(2013) Athi N. Naganathan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

A Rapid, Ensemble and Free Energy Based Method for Engineering Protein Stabilities

(2013) Athi N. Naganathan   JOURNAL OF PHYSICAL CHEMISTRY B

A Disorder-Induced Domino-Like Destabilization Mechanism Governs the Folding and Functional Dynamics of the Repeat Protein IκBα

(2013) Srinivasan Sivanandan et al.   PLoS Computational Biology

Predictions from an Ising-like Statistical Mechanical Model on the Dynamic and Thermodynamic Effects of Protein Surface Electrostatics

(2012) Athi N. Naganathan   Journal of Chemical Theory and Computation

Quantitative Prediction of Protein Folding Behaviors from a Simple Statistical Model

(2011) Pierpaolo Bruscolini et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

PONDR-FIT: A meta-predictor of intrinsically disordered amino acids

(2010) Bin Xue et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Phosphorylation-induced structural changes in smooth muscle myosin regulatory light chain

(2010) D. Kast et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stability effects of mutations and protein evolvability

(2009) Nobuhiko Tokuriki et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Conformational Switch upon Phosphorylation: Human CDK Inhibitor p19INK4dbetween the Native and Partially Folded State

(2008) Christian Löw et al.   ACS Chemical Biology

Improvisation in evolution of genes and genomes: whose structure is it anyway?

(2008) Boris E Shakhnovich et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Chemical, physical, and theoretical kinetics of an ultrafast folding protein

(2008) J. Kubelka et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA