4.6 Article

Divalent metal ion-mediated assembly of spherical nucleic acids: the case study of Cu2+

Journal

PHYSICAL CHEMISTRY CHEMICAL PHYSICS
Volume 17, Issue 45, Pages 30292-30299

Publisher

ROYAL SOC CHEMISTRY
DOI: 10.1039/c5cp05202e

Keywords

-

Funding

  1. Bio & Medical Technology Development Program of the NRF - Korean government, MSIP [2015M3A9D7031015]
  2. Global Ph.D. Fellowship Program of the National Research Foundation of Korea - Ministry of Education [2013H1A2A1032685]
  3. Brain Korea 21 Plus Project

Ask authors/readers for more resources

Despite the critical functions of divalent metal ions (M2+ s) in association with duplex DNA, fundamental and general interactions of M2+ s with spherical nucleic acids (SNAs) composed of single-stranded DNA have rarely been investigated. We have explored that the coordinative nature of the M2+-SNA binding mediates the temperature-and base composition-dependent reversible assemblies of SNAs even without the need of complementary counterparts for duplex-interconnection, additional monovalent metal ions for charge screening, or pre-designed sequences for any non-Watson-Crick base-pairing, all of which are essential for the conventional assembly of SNAs. Cu2+ has been identified to maximize the reversible assembly properties in relation to this M2+-mediated DNA bond, and has been further qualitatively and quantitatively investigated in detail as a model system.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.6
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Chemistry, Multidisciplinary

Roles of zwitterionic charges in polymers on synthesis of Ag seeds with anisotropic growth properties

Hye In Cho, Seungjoo Yi, Ji-Seong Hwang, Ji-Hun Seo, Jae-Seung Lee

JOURNAL OF INDUSTRIAL AND ENGINEERING CHEMISTRY (2020)

Article Chemistry, Physical

Synthesis of Uniformly Sized Bi0.5Sb1.5Te3.0 Nanoparticles via Mechanochemical Process and Wet-Milling for Reduced Thermal Conductivity

Bo-In Park, Miri Shin, Jaeho Park, Jae-Seung Lee, Seung Yong Lee, Seunggun Yu

Summary: In this study, high crystallinity Bi0.5Sb1.5Te3.0 (BST) nanoparticles (NPs) were successfully synthesized via a mechanochemical process, and their sizes were further reduced and uniformly distributed through a wet-milling process. The BST nanocomposites fabricated from BST NPs with smaller grain sizes and finer distributions exhibited significantly reduced thermal conductivities. Wet-milled BST NPs showed ultralow thermal conductivity values at approximately 398 K, demonstrating their potential for thermoelectric applications.

MATERIALS (2021)

Article Chemistry, Physical

Dynamic metallization of spherical DNA via conformational transition into gold nanostructures with controlled sizes and shapes

Won Kyu Lee, Kihun Kwon, Yeonho Choi, Jae-Seung Lee

Summary: This study explored the dynamic metallization of spherically condensed DNA nanoparticles, leading to the formation of various Au nanostructures with unprecedented morphologies through controlled conformational transitions. The condensed DNA nanoparticles served as templates for synthesis, reservoirs of Au3+ for growth, and stabilizers of the surface, resulting in stable Au nanostructures with catalytic activities and excellent SERS properties. This research offers new synthetic routes for bioinorganic nanomaterials.

JOURNAL OF COLLOID AND INTERFACE SCIENCE (2021)

Article Multidisciplinary Sciences

Application of M1 macrophage as a live vector in delivering nanoparticles for in vivo photothermal treatment

Nu-Ri Im, Taeseok Daniel Yang, Kwanjun Park, Jang-Hoon Lee, Jonghwan Lee, Yoon Hyuck Kim, Jae-Seung Lee, Byoungjae Kim, Kwang-Yoon Jung, Youngwoon Choi, Seung-Kuk Baek

Summary: Activated M1 macrophages demonstrated higher uptake capacity and active infiltration towards NPs compared to non-activated M Phi macrophages. Using M1 as live vector led to a more rapid reduction in tumor size, indicating higher efficacy of PTT with NPs-loaded M1.

JOURNAL OF ADVANCED RESEARCH (2021)

Review Chemistry, Analytical

Interfacial interactions of SERS-active noble metal nanostructures with functional ligands for diagnostic analysis of protein cancer markers

Han-Jung Ryu, Won Kyu Lee, Yoon Hyuck Kim, Jae-Seung Lee

Summary: This review focuses on recent developments in the design of SERS probes over the last 4 years, emphasizing their conjugation chemistry for functionalization. Raman dyes tend to have a strong preference for covalent bonding, while antibodies are bonded to nanostructures depending on their activity in the SERS probes.

MICROCHIMICA ACTA (2021)

Article Chemistry, Physical

Silver halide-induced catalyst poisoning of Ag-M bimetallic nanoparticles (biNPs) and their chemical regeneration

Han-Jung Ryu, Won Kyu Lee, Jong Yun Choi, Jae-Seung Lee

Summary: This study investigates the catalytic properties of Ag-M bimetallic nanoparticles and the impact of precursor-induced silver halide byproducts, finding that the catalytic properties are significantly enhanced by removing AgCl with ascorbic acid. The study provides guidance for the controlled synthesis of high purity bimetallic nanoparticles and their efficient applications in various fields.

JOURNAL OF ALLOYS AND COMPOUNDS (2022)

Article Chemistry, Multidisciplinary

Solid-Solution-Solid (SSS) phase transitions for Gram-Scale and High-Throughput synthesis of noble metal nanoparticles in deep eutectic solvents

Yoon Hyuck Kim, Ju-Hwan Oh, Jae-Seung Lee

Summary: The gram-scale synthesis of gold nanoparticles (AuNPs) using a polymerizable deep eutectic solvent (DES) has been developed, leading to high productivity and scalability. The chemical and physical properties of AuNPs have been thoroughly investigated.

JOURNAL OF INDUSTRIAL AND ENGINEERING CHEMISTRY (2022)

Article Nanoscience & Nanotechnology

Hierarchical Metal-Organic Aerogel as a Highly Selective and Sustainable CO2 Adsorbent

Heehyeon Lee, Jongwon Oh, Jin Young Koo, Hiroyoshi Ohtsu, Hyeong Min Jin, Soyoung Kim, Jae-Seung Lee, Hyunchul Kim, Hee Cheul Choi, Youngtak Oh, Seok Min Yoon

Summary: A hierarchical metal-organic aerogel (HMOA) with well-defined micropores has been designed for CO2 adsorption, exhibiting high adsorption capacity and selectivity, as well as vacuum-induced surface regeneration.

ACS APPLIED MATERIALS & INTERFACES (2022)

Article Chemistry, Multidisciplinary

In Situ Tetraalkylammonium Ligand Engineering of Organic-Inorganic Hybrid Perovskite Nanoparticles for Enhancing Long-Term Stability and Optical Tunability

Han-Jung Ryu, Mingyeong Shin, Myeongkee Park, Jae-Seung Lee

Summary: This study introduces an in situ ligand engineering method to stabilize organic-inorganic hybrid perovskite nanoparticles (OIHP NPs) and control their optical properties. By adjusting the concentration and molecular structure of tetraalkylammonium (TAA) halides, the stability of the nanoparticles is significantly improved. In certain conditions, approximately 90% of the initial photoluminescence intensity is preserved.

LANGMUIR (2022)

Article Chemistry, Multidisciplinary

Acrylamide: New Organic Solvent with Chemically Tunable Viscosity for Rapid Gram-Scale Synthesis of Gold Nanoparticles

Yoon Hyuck Kim, Jae-Seung Lee

Summary: Noble metal nanoparticles have unique properties that make them suitable for various applications. This study presents a method for gram-scale synthesis of gold nanoparticles using acrylamide as a solvent. The viscosity of the solvent can be chemically tuned to stabilize high concentrations of synthesized nanoparticles. The synthesized nanoparticles exhibit stability and catalytic activity under high ionic strength conditions.

ACS OMEGA (2022)

Article Biochemical Research Methods

Surface Functionalization and Reversible Disassembly of DNA-Assembly Nanoparticles for Sensitive and Multiplexed Detection of DNA Targets Without Enzymatic and Catalytic Amplification

Seung Yeon Seo, Won Kyu Lee, Jae-Seung Lee

Summary: Recently, DNA-assembly nanoparticles based on DNA-metalion interactions have been developed for drug delivery and metal nanostructure synthesis. In this study, a new chemical strategy was developed to functionalize DNA-assembly nanoparticles with thiolated probe DNA, leading to the successful detection of multiple DNA targets.

BIOCONJUGATE CHEMISTRY (2023)

Article Nanoscience & Nanotechnology

Polyplexes of DNA and Poly(L-lysine) Stabilized by Au Nanoparticles for Targeted Photothermal Therapy

Won Kyu Lee, Joonbum Lee, Jae-Seung Lee

Summary: In this study, highly stable DNA-poly-L-lysine (PLL) polyplexes were synthesized and used as cores to synthesize uniform gold nanoshells for photothermal therapy. By introducing gold nanoparticles (AuNPs) to the polyplex surface, the chemical and physical stability of the polyplexes were significantly enhanced, while maintaining their enzymatic biodegradability. The resulting poly@AuNSs exhibit excellent photothermal properties, high photothermal stability, and outstanding targeting ability towards cancer cells.

ACS APPLIED NANO MATERIALS (2023)

Article Chemistry, Multidisciplinary

Unveiling the Role of Precursors in the Byproduct Formation of AgCl-Replicated Bimetallic Nanostructures and Their Stability-Dependent Photothermal Properties

Han-Jung Ryu, Kyung Tae Kim, Won Kyu Lee, Jae-Seung Lee

Summary: This study investigates the pivotal role of precursor ligands in the photochemical synthesis of metallic cubic mesh nanostructures on the AgCl templates. The study discovers the partial destruction of AgCl and the formation of undesirable byproducts caused by the presence of highly oxidizing and Cl-containing AuCl4(-). Additionally, a synthetic route for producing highly pure and stable metallic nanostructures using a halogen-free Au precursor or Pt-priming is proposed.

ACS OMEGA (2023)

Article Chemistry, Physical

Effect of a single methyl substituent on the electronic structure of cobaltocene studied by computationally assisted MATI spectroscopy

Sergey Yu. Ketkov, Sheng-Yuan Tzeng, Elena A. Rychagova, Anton N. Lukoyanov, Wen-Bih Tzeng

Summary: Metallocenes, including methylcobaltocene, play important roles in various fields of chemistry. The ionization energy and vibrational structure of (Cp ')(Cp)Co can be influenced by introducing methyl substituents. The mass-analyzed threshold ionization spectrum and DFT calculations provide accurate information about the properties and transformations of (Cp ')(Cp)Co.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Review Chemistry, Physical

Polymer mechanochemistry: from single molecule to bulk material

Qifeng Mu, Jian Hu

Summary: Polymer mechanochemistry has experienced a renaissance due to the rapid development of mechanophores and principles governing mechanochemical transduction or material strengthening. It has not only provided fundamental guidelines for converting mechanical energy into chemical output, but also found applications in engineering and smart devices.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Complex oiling-out behavior of procaine with stable and metastable liquid phases

Da Hye Yang, Francesco Ricci, Fredrik L. Nordstrom, Na Li

Summary: Through systematic evaluation of the oiling-out behavior of procaine, we identified both stable and metastable liquid-liquid phase separation, and established phase diagrams to assist in rational selection of crystallization strategies.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Breaking the size constraint for nano cages using annular patchy particles

Vikki Anand Varma, Simmie Jaglan, Mohd Yasir Khan, Sujin B. Babu

Summary: Designing engineering structures like nanocages, shells, and containers through self-assembly of colloids is a challenging problem. This work proposes a simple model for the subunit, which leads to the formation of monodispersed spherical cages or containers. The model with only one control parameter can be used to design cages with the desired radius.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Effect of the charge rate on the mechanical response of composite graphite electrodes: in situ experiment and mathematical analysis

Hainan Jiang, Yaolong He, Xiaolin Li, Zhiyao Jin, Huijie Yu, Dawei Li

Summary: The cycling lifespan and coulombic efficiency of lithium-ion batteries are crucial for high C-rate applications. The Li-ion concentration plays a crucial role in determining the mechanical integrity and structural stability of electrodes. This study focuses on graphite as the working electrode and establishes an experimental system to investigate the mechanical properties of composite graphite electrode at different C-rates. Considering the effect of Li-ion concentration in stress analysis is found to be significant.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

The effect of weak π-π interactions on single-molecule electron transport properties of the tetraphenylethene molecule and its derivatives: a first-principles study

Zhiye Wang, Yunchuan Li, Mingjun Sun

Summary: This study investigates the influence of intramolecular pi-pi interactions on the electronic transport capabilities of molecules. By designing and analyzing three pi-conjugated molecules, the researchers observe that different pi-conjugated structures have varying effects on electron transport. The findings provide a theoretical foundation for designing single-molecule electronic devices with multiple electron channels based on intramolecular pi-pi interactions.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Designed fabrication of MoS2 hollow structures with different geometries and the comparative investigation toward capacitive properties

Yuandong Xu, Haoyang Feng, Chaoyang Dong, Yuqing Yang, Meng Zhou, Yajun Wei, Hui Guo, Yaqing Wei, Jishan Su, Yingying Ben, Xia Zhang

Summary: Hollow MoS2 cubes and spheres were successfully synthesized using a one-step hydrothermal method with the hard template method. The hollow MoS2 cubes exhibited higher specific capacitance and energy density compared to the hollow MoS2 spheres. The symmetrical supercapacitors assembled with these hollow structures showed good performance and high capacity retention after multiple cycles. These findings suggest that controlling the pore structure and surface characteristics of MoS2 is crucial for enhancing its electrochemical properties.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Exploiting the photophysical features of DMAN template in ITQ-51 zeotype in the search for FRET energy transfer

Ainhoa Oliden-Sanchez, Rebeca Sola-Llano, Joaquin Perez-Pariente, Luis Gomez-Hortiguela, Virginia Martinez-Martinez

Summary: The combination of photoactive molecules and inorganic structures is important for the development of advanced materials in optics. In this study, bulky dyes were successfully encapsulated in a zeolitic framework, resulting in emission throughout the visible spectrum.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Insights into the multi-functional lithium difluoro(oxalate)borate additive in boosting the Li-ion reaction kinetics for Li3VO4 anodes

Miaomiao Zhang, Cunyuan Pei, Qiqi Xiang, Lintao Liu, Zhongxu Dai, Huijuan Ma, Shibing Ni

Summary: The design of a solid electrolyte interphase (SEI) plays a crucial role in improving the electrochemical performance of anode materials. In this study, lithium difluoro(oxalate)borate (LiDFOB) is used as an electrolyte additive to form a protective SEI film on Li3VO4 (LVO) anodes. The addition of LiDFOB results in a dense, uniform, stable, and LiF-richer SEI, which enhances the Li-ion storage kinetics. The generated SEI also prevents further decomposition of the electrolyte and maintains the morphology of LVO anodes during charge/discharge processes. This work demonstrates the effectiveness of LiDFOB as a multi-functional additive for LiPF6 electrolytes and provides insights into SEI construction for high-performance LVO anodes.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

New insights into the structure of the Ag(111)-p(4 x 4)-O phase: high-resolution STM and DFT study

B. V. Andryushechkin, T. V. Pavlova, V. M. Shevlyuga

Summary: The atomic structure of the Ag(111)-p(4 x 4)-O phase was reexamined and two phases with the same periodicity were discovered. It was demonstrated that the accepted Ag6 model is incompatible with high-resolution oxygen-sensitive STM images.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

ClO-driven degradation of graphene oxide: new insights from DFT calculations

S. L. Romo-Avila, D. Marquez-Ruiz, R. A. Guirado-Lopez

Summary: In this study, we used density functional theory (DFT) calculations to investigate the interaction between model graphene oxide (GO) nanostructures and chlorine monoxide ClO. We aimed to understand the role of this highly oxidizing species in breaking C-C bonds and forming significant holes on GO sheets. Our results showed that C-C bonds in a single graphene oxide sheet can be broken through a simple mechanism involving the dissociation of two chemically attached ClO molecules. The formation of carbonyl groups and holes on the GO surface was also observed. This study provides important insights into the degradation of carbon nanotubes and the stability of GO during the myeloperoxidase (MPO) catalytic cycle.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Composition dependence of X-ray stability and degradation mechanisms at lead halide perovskite single crystal surfaces

Alberto Garcia-Fernandez, Birgit Kammlander, Stefania Riva, Hakan Rensmo, Ute B. Cappel

Summary: In this study, the X-ray stability of five different lead halide perovskite compositions (MAPbI3, MAPbCl3, MAPbBr3, FAPbBr3, CsPbBr3) was investigated using photoelectron spectroscopy. Different degradation mechanisms and resistance to X-ray were observed depending on the crystal composition. Overall, perovskite compositions based on the MA+ cation were found to be less stable than those based on FA+ or Cs+. Metallic lead formation was most easily observed in the chloride perovskite, followed by bromide, and very little in MAPbI3. Multiple degradation processes were identified for the bromide compositions, including ion migration, formation of volatile and solid products, as well as metallic lead. CsBr was formed as a solid degradation product on the surface of CsPbBr3.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Effect of porosity on rapid dynamic compaction of nickel nanopowder

Timofei Rostilov, Vadim Ziborov, Alexander Dolgoborodov, Mikhail Kuskov

Summary: The shock-loading behavior of nanomaterials is investigated in this study. It is found that shock compaction waves exhibit a distinct two-step structure, with the formation of faster precursor waves that travel ahead of the main compaction waves. The complexity of the shock Hugoniot curve of the tested nanomaterial is described, and the effect of initial porosity on the compressed states is demonstrated.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

The effect of temperature and oxygen partial pressure on the concentration of iron and manganese ions in La1/3Sr2/3Fe1-xMnxO3-δ

Sergey S. Nikitin, Alexander D. Koryakov, Elizaveta A. Antipinskaya, Alexey A. Markov, Mikhail V. Patrakeev

Summary: The stability of La1/3Sr2/3Fe1-xMnxO3-delta, a perovskite-type oxide, under reducing conditions is dependent on the manganese content. Increasing the manganese content leads to a decrease in stability. The behavior of iron and manganese in the oxide shows distinct differences, which can be attributed to the difference in the enthalpy of oxidation reactions. Additionally, the change in the La/Sr ratio affects the concentration of iron and manganese ions.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)

Article Chemistry, Physical

Perovskenes: two-dimensional perovskite-type monolayer materials predicted by first-principles calculations

Mosayeb Naseri, Shirin Amirian, Mehrdad Faraji, Mohammad Abdur Rashid, Maicon Pierre Lourenco, Venkataraman Thangadurai, D. R. Salahub

Summary: Inspired by the successful transfer of freestanding ultrathin films of SrTiO3 and BiFeO3, this study assessed the structural stability and investigated the electronic, optical, and thermoelectric properties of a group of two-dimensional perovskite-type materials called perovskenes. The findings revealed that these materials are wide bandgap semiconductors with potential application in UV shielding. Moreover, they exhibit better electrical and thermal conductivity at high temperatures, enabling efficient power generation in thermoelectric devices.

PHYSICAL CHEMISTRY CHEMICAL PHYSICS (2024)