Two-Photon Processor and SeNeCA: a freely available software package to process data from two-photon calcium imaging at speeds down to several milliseconds per frame

Functional Biases in Visual Cortex Neurons with Identified Projections to Higher Cortical Targets

(2012) Beata Jarosiewicz et al.   CURRENT BIOLOGY

Division and subtraction by distinct cortical inhibitory networks in vivo

(2012) Nathan R. Wilson et al.   NATURE

BioImageXD: an open, general-purpose and high-throughput image-processing platform

(2012) Pasi Kankaanpää et al.   NATURE METHODS

Two-photon optogenetic toolbox for fast inhibition, excitation and bistable modulation

(2012) Rohit Prakash et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Functional mapping of single spines in cortical neurons in vivo

(2011) Xiaowei Chen et al.   NATURE

Neocortical excitation/inhibition balance in information processing and social dysfunction

(2011) Ofer Yizhar et al.   NATURE

Multisensory Integration of Natural Odors and Sounds in the Auditory Cortex

(2011) Lior Cohen et al.   NEURON

Optogenetics in Neural Systems

(2011) Ofer Yizhar et al.   NEURON

Two-photon imaging and analysis of neural network dynamics

(2011) Henry Lütcke et al.   REPORTS ON PROGRESS IN PHYSICS

Molecular and Cellular Approaches for Diversifying and Extending Optogenetics

(2010) Viviana Gradinaru et al.   CELL

Toward reconstructing spike trains from large‐scale calcium imaging data

(2010) Alex C. Kwan   HFSP Journal

Automatic Identification of Fluorescently Labeled Brain Cells for Rapid Functional Imaging

(2010) Ilya Valmianski et al.   JOURNAL OF NEUROPHYSIOLOGY

Fast Nonnegative Deconvolution for Spike Train Inference From Population Calcium Imaging

(2010) Joshua T. Vogelstein et al.   JOURNAL OF NEUROPHYSIOLOGY

Regression-Based Identification of Behavior-Encoding Neurons During Large-Scale Optical Imaging of Neural Activity at Cellular Resolution

(2010) Andrew Miri et al.   JOURNAL OF NEUROPHYSIOLOGY

High-performance genetically targetable optical neural silencing by light-driven proton pumps

(2010) Brian Y. Chow et al.   NATURE

High-speed in vivo calcium imaging reveals neuronal network activity with near-millisecond precision

(2010) Benjamin F Grewe et al.   NATURE METHODS

Ultrafast optogenetic control

(2010) Lisa A Gunaydin et al.   NATURE NEUROSCIENCE

Dichotomy of functional organization in the mouse auditory cortex

(2010) Sharba Bandyopadhyay et al.   NATURE NEUROSCIENCE

Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data

(2009) Eran A. Mukamel et al.   NEURON

Identification and Clustering of Event Patterns From In Vivo Multiphoton Optical Recordings of Neuronal Ensembles

(2008) Ilker Ozden et al.   JOURNAL OF NEUROPHYSIOLOGY

Automated correction of fast motion artifacts for two-photon imaging of awake animals

(2008) David S. Greenberg et al.   JOURNAL OF NEUROSCIENCE METHODS