Scoring optimisation of unbound protein-protein docking including protein binding site predictions

CPORT: A Consensus Interface Predictor and Its Performance in Prediction-Driven Docking with HADDOCK

(2011) Sjoerd J. de Vries et al.   PLoS One

Binding site prediction and improved scoring during flexible protein-protein docking with ATTRACT

(2010) Sébastien Fiorucci et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Strengths and weaknesses of data-driven docking in critical assessment of prediction of interactions

(2010) Sjoerd J. de Vries et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Present and future challenges and limitations in protein-protein docking

(2009) Carles Pons et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Combining interface core and whole interface descriptors in postscan processing of protein-protein docking models

(2009) Noga Kowalsman et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

How Proteins Get in Touch: Interface Prediction in the Study of Biomolecular Complexes

(2008) Sjoerd de Vries et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Using protein binding site prediction to improve protein docking

(2008) Bingding Huang et al.   GENE

A combination of rescoring and refinement significantly improves protein docking performance

(2008) Brian Pierce et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Consensus scoring for enriching near-native structures from protein-protein docking decoys

(2008) Shide Liang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS