Principal component and clustering analysis on molecular dynamics data of the ribosomal L11·23S subdomain

QAARM: quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin

(2011) A. J. Savol et al.   BIOINFORMATICS

Thiostrepton inhibits stable 70S ribosome binding and ribosome-dependent GTPase activation of elongation factor G and elongation factor 4

(2011) Justin D. Walter et al.   NUCLEIC ACIDS RESEARCH

Mapping the Conformational Dynamics and Pathways of Spontaneous Steric Zipper Peptide Oligomerization

(2011) Dirk Matthes et al.   PLoS One

Folding and unfolding characteristics of short beta strand peptides under different environmental conditions and starting configurations

(2010) Astrid Maaß et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Comparing geometric and kinetic cluster algorithms for molecular simulation data

(2010) Bettina Keller et al.   JOURNAL OF CHEMICAL PHYSICS

Molecular Determinants of Microbial Resistance to Thiopeptide Antibiotics

(2010) Sascha Baumann et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Free-energy landscape, principal component analysis, and structural clustering to identify representative conformations from molecular dynamics simulations: The myoglobin case

(2009) Elena Papaleo et al.   JOURNAL OF MOLECULAR GRAPHICS & MODELLING

Deconstructing the Native State: Energy Landscapes, Function, and Dynamics of Globular Proteins

(2009) Pavel I. Zhuravlev et al.   JOURNAL OF PHYSICAL CHEMISTRY B

The Structure of the Ribosome with Elongation Factor G Trapped in the Posttranslocational State

(2009) Y.-G. Gao et al.   SCIENCE

A Fluorescent Probe for the 70 S-Ribosomal GTPase-Associated Center

(2008) Sebastian Schoof et al.   CHEMBIOCHEM

Construction of the free energy landscape of biomolecules via dihedral angle principal component analysis

(2008) Alexandros Altis et al.   JOURNAL OF CHEMICAL PHYSICS

Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping

(2008) Stephan Frickenhaus et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Mapping the Binding Site of Thiopeptide Antibiotics by Proximity-Induced Covalent Capture

(2008) Sascha Baumann et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Translational Regulation via L11: Molecular Switches on the Ribosome Turned On and Off by Thiostrepton and Micrococcin

(2008) Joerg M. Harms et al.   MOLECULAR CELL