Selection on GGU and CGU Codons in the High Expression Genes in Bacteria

A Role for tRNA Modifications in Genome Structure and Codon Usage

(2012) Eva Maria Novoa et al.   CELL

Transfer RNA Gene Numbers may not be Completely Responsible for the Codon Usage Bias in Asparagine, Isoleucine, Phenylalanine, and Tyrosine in the High Expression Genes in Bacteria

(2012) Siddhartha Sankar Satapathy et al.   JOURNAL OF MOLECULAR EVOLUTION

Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids

(2012) Naama Wald et al.   NUCLEIC ACIDS RESEARCH

Optimal Codon Identities in Bacteria: Implications from the Conflicting Results of Two Different Methods

(2011) Bin Wang et al.   PLoS One

Wobble base-pairing slows in vivo translation elongation in metazoans

(2011) M. Stadler et al.   RNA

Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles

(2011) Maya Botzman et al.   GENOME BIOLOGY

Impact of translational selection on codon usage bias in the archaeon Methanococcus maripaludis

(2010) L. R. Emery et al.   Biology Letters

Strand-specific mutational bias influences codon usage of weakly expressed genes in Escherichia coli

(2010) Bhesh Raj Powdel et al.   GENES TO CELLS

The Influence of Anticodon-Codon Interactions and Modified Bases on Codon Usage Bias in Bacteria

(2010) W. Ran et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular traits controlling host range and adaptation to plants in Ralstonia solanacearum

(2010) Stéphane Genin   NEW PHYTOLOGIST

A General Model of Codon Bias Due to GC Mutational Bias

(2010) Gareth A. Palidwor et al.   PLoS One

Mutational Patterns Cannot Explain Genome Composition: Are There Any Neutral Sites in the Genomes of Bacteria?

(2010) Eduardo P. C. Rocha et al.   PLoS Genetics

Evidence That Mutation Is Universally Biased towards AT in Bacteria

(2010) Ruth Hershberg et al.   PLoS Genetics

A four-column theory for the origin of the genetic code: tracing the evolutionary pathways that gave rise to an optimized code

(2009) Paul G Higgs   Biology Direct

Deciphering synonymous codons in the three domains of life: Co-evolution with specific tRNA modification enzymes

(2009) Henri Grosjean et al.   FEBS LETTERS

General Rules for Optimal Codon Choice

(2009) Ruth Hershberg et al.   PLoS Genetics

Protein abundance profiling of the Escherichia coli cytosol

(2008) Yasushi Ishihama et al.   BMC GENOMICS

Comparison of Correspondence Analysis Methods for Synonymous Codon Usage in Bacteria

(2008) H. Suzuki et al.   DNA RESEARCH

Codon Usage in Mitochondrial Genomes: Distinguishing Context-Dependent Mutation from Translational Selection

(2007) W. Jia et al.   MOLECULAR BIOLOGY AND EVOLUTION