Article
Biotechnology & Applied Microbiology
Jingrong Zhu, Jiawen Liu, Weilin Li, Yunrui Ru, Di Sun, Cong Liu, Zongyun Li, Weijie Liu
Summary: This study investigates the dynamic changes in community structure and degradation activity of the lignocellulolytic bacterial consortium MMBC-1 during its subculturing revival. The results show that MMBC-1's enzyme activities and the degradation of cellulose and hemicellulose recovered and occurred during the revival process. The dominant bacteria in MMBC-1 were replaced by other bacterial genera and families. Correlation analysis suggests that only a few high-abundance operational taxonomic units (OTUs) directly engage in lignocellulose degradation, while low-abundance OTUs may also play an important role in degradation.
BIORESOURCES AND BIOPROCESSING
(2022)
Article
Microbiology
Xin-jiang Liu, Huan Yu, Shao-Juan Du, Zong-Jun Du, Meng-Qi Ye
Summary: A new yellow-orange rod-shaped bacterium, Fulvivirga sedimenti sp. nov., was isolated from sediment collected in Weihai, Shandong Province, China. Strain 1062(T) has distinct physiological, biochemical, and chemotaxonomic characteristics.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Delong Kong, Qingqing Li, Yanzheng Zhou, Yan Wang, Xu Jiang, Zhiye Wang, Zhiyong Ruan
Summary: A novel species of the genus Pseudomonas, named Pseudomonas tumuqii sp. nov., was isolated from greenhouse soil in Beijing, China. This bacterium possesses distinctive morphology, as well as specific genetic and biochemical characteristics.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Delong Kong, Yan Wang, Qingqing Li, Yanzheng Zhou, Xu Jiang, Zhen Xing, Zhiye Wang, Zhiyong Ruan
Summary: In this study, a novel bacterium strain LAMRS1(T) was isolated from a soil sample collected in Hebei Province, PR China. It was classified as a new species in the genus Chryseobacterium based on 16S rRNA gene sequence analysis and other characteristics. The proposed name for this new species is Chryseobacterium subflavum sp. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2022)
Article
Microbiology
Cansheng Yuan, Bin Liu, Lin Wang, Weihua Long, Zhuang Ke, Jian He
Summary: In this study, a novel bacterium strain LB-8(T) was isolated from an activated sludge sample in Binzhou city, Shandong province, PR China. The strain belongs to a new genus Paraflavisolibacter caeni within the family Chitinophagaceae, and is most closely related to Flavisolibacter, Cnuella, and Paracnuella genera.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
(2023)
Article
Microbiology
Haitao Wang, Alexandre Bagnoud, Rafael Ponce-Toledo, Melina Kerou, Micha Weil, Christa Schleper, Tim Urich
Summary: The newly established taxonomy for AOA based on amoA provides a finer resolution and reveals novel environmental patterns. By linking 16S rRNA gene classification to this novel taxonomy through phylogenetic congruence, it allows for the identification of specific AOA clades. This approach provides a pathway for interpreting the ecology of globally abundant AOA, especially when using 16S rRNA gene sequencing data in microbiome studies.
Article
Microbiology
Jinshuang Bo, Xuezhen Song, Shuai Wang, Zongjun Du
Summary: Strain F6397(T) isolated from marine sediment in Weihai, PR China is a novel species of the genus Winogradskyella, showing optimal growth at 30-33 degrees C, pH 7.5, and in the presence of 3.0% NaCl.
ARCHIVES OF MICROBIOLOGY
(2021)
Article
Environmental Sciences
Tian-Shu Zhang, Ya-Ning Zhang, De-Chen Lu, Ya Gong, Zong-Jun Du
Summary: A novel species named Carboxylicivirga marinus sp. nov. was isolated from a sediment sample in Weihai, China, exhibiting specific growth conditions and chemical composition.
FRONTIERS IN MARINE SCIENCE
(2021)
Article
Microbiology
Lei Shen, Miaomiao An, Ruina Liang, Ying Li, Xiangwei He, Guozhu Zhao
Summary: A novel Gram-stain-negative bacterium, designated GHJ8(T), was isolated from the rhizosphere soil of Ulmus pumila L., Shanxi Province, China. The strain showed certain adaptations to environmental stress and had distinct genotypic and phenotypic properties compared to recognized species of the genus Luteolibacter. Based on its characteristics and phylogenetic analysis, the strain GHJ8(T) represents a new species, named Luteolibacter rhizosphaerae sp. nov. with GHJ8(T) as the type strain.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
(2023)
Review
Microbiology
Guillaume Tahon, Patricia Geesink, Thijs J. G. Ettema
Summary: The discovery and study of Archaea in the past few decades have greatly expanded our understanding of their cell biology, physiology, ecology, and diversity. However, due to computational limitations and the ongoing discovery of new lineages, a stable archaeal phylogeny has not yet been achieved. Therefore, obtaining consensus on the phylogenetic and taxonomic classification of Archaea should be a high priority for the research community.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 75, 2021
(2021)
Article
Microbiology
Yin Huang, Rashidin Abdugheni, Jinbiao Ma, Rui Wang, Lei Gao, Yonghong Liu, Wenjun Li, Man Cai, Li Li
Summary: A new species of Halomonas, named Halomonas flagellata sp. nov., was isolated from soil in Xinjiang, China. It is a motile bacterium with multiple flagella and shows high similarity to other Halomonas strains.
ARCHIVES OF MICROBIOLOGY
(2023)
Article
Microbiology
Xiaoyan Han, Qi Zhang, Qingyun Ma, Delong Kong, Yiqing Zhou, Xu Jiang, Wei Zhang, Zhiyong Ruan
Summary: Strain LAM7117(T) is a Gram-positive rod-shaped bacterium that can grow at 35 degrees Celsius and pH 7.5, withstanding NaCl concentrations up to 9%. It belongs to a distinct phylogenetic subclade within the genus Arthrobacter, showing highest similarity with A. crystallopoietes JCM 2522(T) (97.7%). The genomic analyses suggest it should be classified as a novel species, named Arthrobacter sulfonylureivorans sp. nov.
ARCHIVES OF MICROBIOLOGY
(2021)
Article
Microbiology
Ve Van Le, So-Ra Ko, Mingyeong Kang, Sang-Ah Lee, Hee-Mock Oh, Chi-Yong Ahn
Summary: A rod-shaped bacterial strain DH6(T) was isolated from freshwater in the Daechung Reservoir, Korea, and belongs to the novel species Panacibacter microcysteis sp. nov. This strain showed high tolerance to various environmental conditions, including pH, temperature, and salt concentration.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Ve Van Le, So-Ra Ko, Mingyeong Kang, Hee-Mock Oh, Chi-Yong Ahn
Summary: A novel species of the genus Hymenobacter, named Hymenobacter cyanobacteriorum sp. nov., was isolated from a eutrophic reservoir. This strain showed differences in morphology and genetic sequences compared to related strains.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Microbiology
Jian-Heng Xue, Li-Fang Shi, Bei-Ning Zhang, Wen-Jie Wu, Yuan Gao, Qian Zhu, Li-Hua Zhao
Summary: This article describes a novel marine bacterium, Oceanisphaera pacifica sp. nov., isolated from the intestine of Trichiurus japonicus in Weihai, China. Through morphological, biochemical, genetic sequencing, and genome analysis, it has been confirmed as a new species of the genus Oceanisphaera.
ARCHIVES OF MICROBIOLOGY
(2022)
Article
Biochemistry & Molecular Biology
Myung Kyum Kim, Ju-Young Kim, Su Jeong Kim, Min Ji Kim, Ju Yeon Lee, Chang-Gyeom Kim, Sathiyaraj Srinivasan
MOLECULAR & CELLULAR TOXICOLOGY
(2017)
Article
Biochemistry & Molecular Biology
Sathiyaraj Srinivasan, Seung-Yeol Lee, Myung Kyum Kim, Hee-Young Jung
MOLECULAR & CELLULAR TOXICOLOGY
(2017)
Article
Microbiology
Aravind Sundararaman, Sathiyaraj Srinivasan, Jong-Hoon Lee, Sang-Seob Lee
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
(2018)
Article
Microbiology
Myung Kyum Kim, Eun Tae Kim, Sang Bum Kim, Ha Yeon Jeong, Beom Young Park, Sathiyaraj Srinivasan
JOURNAL OF MICROBIOLOGY
(2018)
Article
Biochemistry & Molecular Biology
Gayathri Sathiyaraj, Myung Kyum Kim, Ju-Young Kim, Su-Jeong Kim, Jun Hwee Jang, Soohyun Maeng, Myung-Suk Kang, Sathiyaraj Srinivasan
MOLECULAR & CELLULAR TOXICOLOGY
(2018)
Article
Biochemistry & Molecular Biology
Gayathri Sathiyaraj, Myung Kyum Kim, Ju-Young Kim, Su-Jeong Kim, Jun Hwee Jang, Soohyun Maeng, Myung-Suk Kang, Sathiyaraj Srinivasan
MOLECULAR & CELLULAR TOXICOLOGY
(2018)
Article
Biochemistry & Molecular Biology
Myung-Suk Kang, Sathiyaraj Srinivasan
MOLECULAR & CELLULAR TOXICOLOGY
(2018)
Article
Multidisciplinary Sciences
Seho Cha, Sathiyaraj Srinivasan, Jun Hyeong Jang, Dongwook Lee, Sora Lim, Kyung Sang Kim, Weonhwa Jheong, Dong-Won Lee, Eung-Roh Park, Hyun-Mi Chung, Joonho Choe, Myung Kyum Kim, Taegun Seo
Correction
Microbiology
Kunho Kim, Sathiyaraj Srinivasan, Sang-Seob Lee
CURRENT MICROBIOLOGY
(2019)
Correction
Microbiology
Jae-Bong Lee, Seon Hwa Jeon, Seok-Gwan Choi, Hee-Young Jung, Myung Kyum Kim, Sathiyaraj Srinivasan
JOURNAL OF MICROBIOLOGY
(2019)
Article
Ecology
Matthew Chidozie Ogwu, Sathiyaraj Srinivasan, Ke Dong, Dhamodharan Ramasamy, Bruce Waldman, Jonathan M. Adams
Article
Multidisciplinary Sciences
Matthew Chidozie Ogwu, Dorsaf Kerfahi, HoKyung Song, Ke Dong, Hoseong Seo, Sangyong Lim, Sathiyaraj Srinivasan, Myung Kyum Kim, Bruce Waldman, Jonathan M. Adams
SCIENTIFIC REPORTS
(2019)
Article
Biochemistry & Molecular Biology
Muhammad Zubair Siddiqi, Sathiyaraj Srinivasan, Hye Yoon Park, Wan-Taek Im
Review
Microbiology
Galana Siro, Atanas Pipite, Ketan Christi, Sathiyaraj Srinivasan, Ramesh Subramani
Summary: Microbial secondary metabolites, particularly those produced by actinobacteria, are crucial sources of antibiotics for combating drug-resistant pathogens. Coral-associated actinomycetes are considered as potential hotspots for discovering untapped secondary metabolites with bioactive properties. However, our knowledge about the diversity, distribution, and biochemistry of marine actinomycetes in relation to hard corals is limited.
Article
Microbiology
Shriya Sawant, Jinesh Dugad, Deepak Parikh, Sathiyaraj Srinivasan, Harinder Singh
Summary: Dysbiosis of the oral microbiome is linked to oral cancer, and tobacco chewing is a risk factor associated with oral dysbiosis. This study investigated the oral bacterial diversity of Indian oral cancer patients and tobacco chewers, identifying potential biomarkers for the Indian population. The results showed differences in the abundance of certain bacterial genera between the study groups, and functional predictions highlighted gene expression variations related to specific metabolic processes.