Review
Chemistry, Physical
Giacomo Parigi, Enrico Ravera, Marco Fragai, Claudio Luchinat
Summary: Field-cycling NMR relaxometry is a well-established technique that provides information on molecular structure and dynamics of biological systems. By collecting nuclear magnetic relaxation dispersion (NMRD) profiles, information on motions occurring on different time scales can be obtained, proving very useful for the characterization of paramagnetic proteins.
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY
(2021)
Article
Chemistry, Physical
M. Becher, M. Flaemig, E. A. Roessler
Summary: This study applies field-cycling P-31 nuclear magnetic resonance (NMR) to investigate the reorientational susceptibility of two glass formers. The results reveal different relaxation behaviors at different frequencies and demonstrate similar behavior close to the glass transition temperature. Additionally, the diffusion coefficient is compared using different techniques.
JOURNAL OF CHEMICAL PHYSICS
(2022)
Article
Engineering, Chemical
Karol Kubat, Anna Krupa, Witold Brniak, Agnieszka Wegrzyn, Dorota Majda, Agata Bogdal, Hubert Haranczyk
Summary: The study aimed to assess the impact of polymer load and rotational speed of high-energy ball milling on the performance of binary co-milled solid dispersions. It was found that these variables determined the particle size of the formulation. At a rotational speed of 400 rpm, all formulations were XRD-amorphous, but micellar solubilization in Soluplus was necessary to ensure the immediate release of the hydrophobic crystalline drug. Additionally, the hydration level increased with increasing polymer load when the formulation was exposed to water vapor.
Article
Engineering, Chemical
Karol Kubat, Anna Krupa, Witold Brniak, Agnieszka Wegrzyn, Dorota Majda, Agata Bogda, Hubert Haranczyk
Summary: The presence of residual water in ball-milled amorphous solid dispersions can negatively affect their performance in terms of molecular mobility, crystallinity, particle size, and drug dissolution rate. This study aimed to investigate the effects of polymer load and rotational speed on the performance of binary co-milled solid dispersions containing tadalafil and Soluplus. Various characterization techniques were used to analyze the formulations, and dissolution studies were conducted. The results showed that both polymer load and rotational speed influenced the particle size of the dispersions. Furthermore, the hydration level increased with higher polymer load and rotational speed, which could impact the kinetics of drug recrystallization and hinder dissolution.
Article
Chemistry, Physical
M. Becher, T. Wohlfromm, E. A. Roessler, M. Vogel
Summary: In this study, a combination of field-cycling relaxometry and molecular dynamics simulations was used to investigate the rotational and translational dynamics associated with the glassy slowdown of glycerol. The results showed a high correspondence between experimental data and simulations, with slow transitions between molecular configurations observed in rotational motion and force-free hard sphere model describing the translational contribution. The time scales of rotational and translational motions exhibited an unusually large separation in both experiment and simulation.
JOURNAL OF CHEMICAL PHYSICS
(2021)
Article
Chemistry, Physical
Katja Tolkkinen, Sarah E. Mailhiot, Anne Selent, Otto Mankinen, Henning Henschel, Miika T. Nieminen, Matti Hanni, Anu M. Kantola, Timo Liimatainen, Ville-Veikko Telkki
Summary: T (1 rho) is an NMR relaxation mode sensitive to low frequency molecular motions, making it valuable in biomolecular research. We introduce a new method, SPICY, for measuring T-1 rho relaxation times. The SPICY sequence allows determination of T-1 rho within a single scan, shortening experiment time remarkably. We demonstrate the method using H-1 T-1 rho relaxation dispersion experiments and show good agreement with traditional experiments.
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
(2023)
Review
Biochemistry & Molecular Biology
Mary F. Roberts, Lizbeth Hedstrom
Summary: The dynamics of enzyme-bound substrates and cofactors in catalytic complexes can be measured using field cycling NMR relaxometry. This study uncovers new binding modes and reaction-specific dynamic networks, highlighting the active role of distal interactions in catalysis.
FRONTIERS IN MOLECULAR BIOSCIENCES
(2022)
Article
Chemistry, Multidisciplinary
Serafima Guseva, Vincent Schnapka, Wiktor Adamski, Damien Maurin, Rob W. H. Ruigrok, Nicola Salvi, Martin Blackledge
Summary: The liquid-liquid phase separation of flexible biomolecules is a common phenomenon in the formation of membraneless organelles. Nuclear magnetic resonance spectroscopy and molecular dynamics simulations were used to study the dynamics of an intrinsically disordered protein in dilute and dense phases. The results showed that the dynamics of the protein were significantly slowed down and chain-like motions dominated in the dense phase.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2023)
Article
Chemistry, Multidisciplinary
Thomas B. R. Robertson, Rose C. Bannister, Topaz A. A. Cartlidge, Thimo Hugger, Sebastien Breham, Klaus Zick, Frank Engelke, Sam Thompson, Giuseppe Pileio
Summary: Long-lived singlet spin order extends the spin memory by more than an order of magnitude, making it useful for NMR diffusion experiments in porous media. Singlet order offers the advantage of being immune to internal field gradients, allowing for exploration of longer diffusion times and access to structural features of the medium. To overcome the limitations of high magnetic field, we developed a dual-core system for preparing and manipulating singlet order in low magnetic field, and a probe for polarization and detection in high magnetic field. The system can be used for various NMR experiments, including diffusion tensor imaging.
FRONTIERS IN CHEMISTRY
(2023)
Article
Chemistry, Physical
Francesca Nardelli, Francesca Martini, Elisa Carignani, Elena Rossi, Silvia Borsacchi, Mattia Cettolin, Antonio Susanna, Marco Arimondi, Luca Giannini, Marco Geppi, Lucia Calucci
Summary: The study on polyisoprene rubber using FC NMR relaxometry revealed that the presence of fillers moderately modified glassy dynamics and affected polymer dynamics in the Rouse regime. A change in the frequency dependence of chi ''(pol)(omega) at low frequencies was observed for all filled rubbers, especially more pronounced for those reinforced with silica.
JOURNAL OF PHYSICAL CHEMISTRY B
(2021)
Article
Chemistry, Physical
Natalia Diaz, Dimas Suarez
Summary: This study demonstrates the accuracy of estimating the entropy of flexible molecules using a partitioning approach based on rigid-rotor-harmonic-oscillator (RRHO) entropy and Gibbs-Shannon entropy. By employing discretization and expansion techniques that capture the correlation effects among torsional motions, the entropy of single molecules of varying sizes can be accurately computed. Extensive sampling, such as classical molecular dynamics simulations, is crucial for reliable entropy estimation.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION
(2022)
Article
Engineering, Environmental
Luke Forster, Carmine D'Agostino, Margot Anabell Llosa-Tanco, Vincenzo Spallina, Camilla Brencio, Fausto Gallucci, Matthew Lindley, Sarah J. Haigh, David Alfredo Pacheco-Tanaka
Summary: The carbonization temperature of Al-CMSM significantly affects pore size, hydrophilicity, permeance, and permselectivity. Lower carbonization temperatures produce more hydrophilic membranes with higher water permeance. Water permeance is higher than CH4 permeance due to the larger kinetic diameter of CH4 and the enhanced adsorption-diffusion transport mechanism in hydrophilic pores.
CHEMICAL ENGINEERING JOURNAL
(2021)
Article
Materials Science, Multidisciplinary
S. Mohanty, J. Babu, Y. Furukawa, R. Nath
Summary: The structural and magnetic properties of the geometrically frustrated spin-1/2 capped-kagome antiferromagnet (RbCl)Cu5P2O10 were investigated. It was found that the compound exhibits structural transitions and double magnetic transitions, which make it intriguing for further investigations.
Article
Chemistry, Multidisciplinary
Okten Ungor, Tyler M. Ozvat, Zhen Ni, Joseph M. Zadrozny
Summary: In this study, a new pathway to design spins with long-lived coherence and strong temperature sensitivity is introduced by mimicking the temperature sensitivity of an electron spin with a robust nuclear spin. The results show that spin-crossover phenomena can enable electron-spin-like temperature sensitivities in nuclear spins while maintaining robust coherence times at room temperature.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
(2022)
Article
Polymer Science
Denise Besghini, Michele Mauri, Payam Hashemi, Matthias Knarr, Roland Adden, Petra Mischnick, Roberto Simonutti
Summary: The reversible gelation process of aqueous methylcellulose (MC) solutions at high temperature was studied using low-field time-domain nuclear magnetic resonance (LF-TD-NMR). The gel transition did not affect the water self-diffusion coefficient, but resulted in a decrease of the proton transverse relaxation times H-1 T (2) by more than 60%. The effects of molecular weight and concentration of polysaccharide chains on gel transition temperature and strength were investigated. The findings were in agreement with literature results from more advanced techniques, such as small-angle X-ray and neutron scattering (SAXS and SANS), and supported the idea of a network structure of disorderly arranged fibrils with an inhomogeneous mesh size at the order of tens of microns.
Article
Biophysics
Yi-Ping Huang, Chao-Cheng Cho, Chi-Fon Chang, Chun-Hua Hsu
BIOMOLECULAR NMR ASSIGNMENTS
(2016)
Article
Biochemistry & Molecular Biology
Ching-Yu Chou, Minglee Chu, Chi-Fon Chang, Tsunai Yu, Tai-huang Huang, Dimitris Sakellariou
JOURNAL OF BIOMOLECULAR NMR
(2016)
Article
Agriculture, Multidisciplinary
Chen Hsu, Bo-Yuan Wu, Yu-Chuan Chang, Chi-Fon Chang, Tai-Ying Chiou, Nan-Wei Su
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2018)
Article
Multidisciplinary Sciences
Ching-Yu Chou, Mouna Abdesselem, Cedric Bouzigues, Minglee Chu, Angelo Guiga, Tai-Huang Huang, Fabien Ferrage, Thierry Gacoin, Antigoni Alexandrou, Dimitris Sakellariou
SCIENTIFIC REPORTS
(2017)
Article
Chemistry, Multidisciplinary
Ning-Shian Hsu, Yung-Lin Wang, Kuan-Hung Lin, Chi-Fon Chang, Syue-Yi Lyu, Li-Jen Hsu, Yu-Chen Liu, Chin-Yuan Chang, Chang-Jer Wu, Tsung-Lin Li
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2018)
Article
Biophysics
Sofia S. Mariasina, Olga A. Petrova, Ilya A. Osterman, Olga V. Sergeeva, Sergey V. Efimov, Vladimir V. Klochkov, Petr V. Sergiev, Olga A. Dontsova, Tai-huang Huang, Chi-Fon Chang, Vladimir I. Polshakov
BIOMOLECULAR NMR ASSIGNMENTS
(2018)
Article
Multidisciplinary Sciences
Chu-Ting Liang, Yu-Shan Lin, Yi-Choang Huang, Hsien-Lu Huang, Jia-Qian Yang, Tsung-Hsien Wu, Chi-Fon Chang, Shing-Jong Huang, Hsien-Bin Huang, Ta-Hsien Lin
SCIENTIFIC REPORTS
(2018)
Article
Biochemistry & Molecular Biology
Ning-Shian Hsu, Yung-Lin Wang, Kuan-Hung Lin, Chi-Fon Chang, Shyue-Chu Ke, Syue-Yi Lyu, Li-Jen Hsu, Yi-Shan Li, Sheng-Chia Chen, Kuei-Chen Wang, Tsung-Lin Li
Article
Multidisciplinary Sciences
Tien-Wei Lin, Chi-Fon Chang, Yu-Jen Chang, Yi-Hung Liao, Hui-Ming Yu, Yun-Ru Chen
Article
Biochemistry & Molecular Biology
Sofia S. Mariasina, Chi-Fon Chang, Olga A. Petrova, Sergey V. Efimov, Vladimir V. Klochkov, Olga I. Kechko, Vladimir A. Mitkevich, Petr V. Sergiev, Olga A. Dontsova, Vladimir I. Polshakov
Article
Biochemistry & Molecular Biology
Kai-Cyuan He, Yi-Ru Chen, Chu-Ting Liang, Shi-Jie Huang, Chung-Ying Tzeng, Chi-Fon Chang, Shing-Jong Huang, Hsien-Bin Huang, Ta-Hsien Lin
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2020)
Article
Biophysics
Meng-Hsuan Lin, Tsun-Ai Yu, Chi-Fon Chang, Yoshifumi Nishikawa, Chun-Hua Hsu
BIOMOLECULAR NMR ASSIGNMENTS
(2020)
Article
Biophysics
Eugene G. Maksimov, Gennady Yu. Laptev, Dmitriy S. Blokhin, Vladimir V. Klochkov, Yury B. Slonimskiy, Nikolai N. Sluchanko, Thomas Friedrich, Chi-Fon Chang, Vladimir I. Polshakov
Summary: This study focuses on the photoprotection mechanism in cyanobacteria mediated by Orange Carotenoid Protein (OCP) and its C-terminal domain homologs (CTDHs), which play a crucial role in multidirectional carotenoid transfer. NMR techniques were used to analyze the structure of CTDH, revealing a largely equivalent structure in solution and in the crystal. These findings shed light on the dynamics of CTDH and provide a platform for further analysis of the holo-CTDH structure and the development of antioxidant nanocarriers for biomedical applications.
BIOMOLECULAR NMR ASSIGNMENTS
(2021)
Article
Biophysics
Meng-Hsuan Lin, Yi-Ping Huang, Chi-Fon Chang, Chun-Hua Hsu
Summary: SARS-CoV-2, a novel pathogen causing the pneumonia COVID-19, contains a macro domain in its genome that may regulate ADP-ribosylation in host cells and initiate viral replication. The resonance assignments of the SARS-CoV-2 macro domain provide a foundation for further structural deciphering and biophysical investigation, aiding in understanding protein function and antiviral agent design.
BIOMOLECULAR NMR ASSIGNMENTS
(2021)
Article
Biology
Meng-Hsuan Lin, Chao-Cheng Cho, Yi-Chih Chiu, Chia-Yu Chien, Yi-Ping Huang, Chi-Fon Chang, Chun-Hua Hsu
Summary: The macro domain is an ADP-ribose (ADPR) binding module that functions as a sensor to recognize NAD metabolites. This study investigates the ligand selectivity and binding properties of the MERS-CoV macro domain, revealing that NAD has similar binding ability with ADPR due to the thermal-tunable binding pocket. The enhanced binding affinity of the MERS-CoV macro domain to NAD at physiological temperature suggests the need for further research to uncover its biological functions.
COMMUNICATIONS BIOLOGY
(2021)