HIV Migration Between Blood and Cerebrospinal Fluid or Semen Over Time

Impact of seminal cytomegalovirus replication on HIV-1 dynamics between blood and semen

(2012) Sara Gianella et al.   JOURNAL OF MEDICAL VIROLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Time-measured phylogenies of gag, pol and env sequence data reveal the direction and time interval of HIV-1 transmission

(2011) Andrea Rachinger et al.   AIDS

Ancient Hybridization and an Irish Origin for the Modern Polar Bear Matriline

(2011) Ceiridwen J. Edwards et al.   CURRENT BIOLOGY

Associations between Virologic and Immunologic Dynamics in Blood and in the Male Genital Tract

(2011) S. Gianella et al.   JOURNAL OF VIROLOGY

The evolution of HIV: Inferences using phylogenetics

(2011) Eduardo Castro-Nallar et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Role of donor genital tract HIV-1 diversity in the transmission bottleneck

(2011) D. I. Boeras et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants

(2011) Suzanne English et al.   Retrovirology

Genetic and functional heterogeneity of CNS-derived tat alleles from patients with HIV-associated dementia

(2010) Daniel Cowley et al.   JOURNAL OF NEUROVIROLOGY

The Origins of Sexually Transmitted HIV Among Men Who Have Sex with Men

(2010) D. M. Butler et al.   Science Translational Medicine

Phylodynamics and Human-Mediated Dispersal of a Zoonotic Virus

(2010) Chiraz Talbi et al.   PLoS Pathogens

HIV-1 Populations in Semen Arise through Multiple Mechanisms

(2010) Jeffrey A. Anderson et al.   PLoS Pathogens

HIV-1 V3 envelope deep sequencing for clinical plasma specimens failing in phenotypic tropism assays

(2010) Ina Vandenbroucke et al.   AIDS Research and Therapy

Learning to Count: Robust Estimates for Labeled Distances between Molecular Sequences

(2009) J. D. O'Brien et al.   MOLECULAR BIOLOGY AND EVOLUTION

Compartmentalization of HIV-1 within the Female Genital Tract Is Due to Monotypic and Low-Diversity Variants Not Distinct Viral Populations

(2009) Marta Bull et al.   PLoS One

Evolutionary History and Phylogeography of Human Viruses

(2008) Edward C. Holmes   Annual Review of Microbiology

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

(2008) Michael Worobey et al.   NATURE

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE

Pleocytosis is associated with disruption of HIV compartmentalization between blood and cerebral spinal fluid viral populations

(2008) Davey M. Smith et al.   VIROLOGY