Article
Immunology
Yi Cai, Yejun Wang, Chenyan Shi, Youchao Dai, Fuxiang Li, Yuzhong Xu, Peize Zhang, Fanhui Kong, Guofang Deng, Zhihua Wen, Qi Zhou, Boxi Chris Kang, Amit Singhal, Qianting Yang, Carl G. Feng, Xinchun Chen
Summary: The study reveals the landscape of local T cell immunity in tuberculosis and provides insights into the involvement of specific T cell populations in the pathogenesis of tuberculous pleural effusion (TPE). The findings suggest a link between clonal expansion of Granzyme K-expressing CD8 T cells and TPE.
JOURNAL OF EXPERIMENTAL MEDICINE
(2022)
Article
Immunology
Manuela Baronio, Francesco Saettini, Luisa Gazzurelli, Stefano Rossi, Antonio Marzollo, Silvia Ricci, Daniele Zama, Boaz Palterer, Canessa Clementina, Lodi Lorenzo, Marco Chiarini, Alessandra Sottini, Luisa Imberti, Chiara Gorio, Linda Rossini, Raffaele Badolato, Alessandro Plebani, Daniele Moratto, Vassilios Lougaris
Summary: Our study found that patients with JS may experience significant numerical and maturational alterations in the T-, B-, and NK-cell compartments. These findings suggest that JS patients should be regularly monitored from an immunological point of view.
JOURNAL OF CLINICAL IMMUNOLOGY
(2022)
Article
Multidisciplinary Sciences
David S. Fischer, Meshal Ansari, Karolin Wagner, Sebastian Jarosch, Yiqi Huang, Christoph H. Mayr, Maximilian Strunz, Niklas J. Lang, Elvira D'Ippolito, Monika Hammel, Laura Mateyka, Simone Weber, Lisa S. Wolff, Klaus Witter, Isis E. Fernandez, Gabriela Leuschner, Katrin Milger, Marion Frankenberger, Lorenz Nowak, Katharina Heinig-Menhard, Ina Koch, Mircea G. Stoleriu, Anne Hilgendorff, Juergen Behr, Andreas Pichlmair, Benjamin Schubert, Fabian J. Theis, Dirk H. Busch, Herbert B. Schiller, Kilian Schober
Summary: This study used single-cell RNA sequencing to identify the phenotypic profile of SARS-CoV-2-reactive T cells, inducing transcriptional shifts by in vitro antigenic stimulation and revealing phenotypic effects introduced by antigen-specific stimulation. The results show that reverse phenotyping can provide an integrated insight into the cellular states of SARS-CoV-2-reactive T cells across tissues and activation states.
NATURE COMMUNICATIONS
(2021)
Article
Medicine, Research & Experimental
Zhiyi Liu, Fuyi Liao, Jihong Zhu, Dequan Zhou, Gyu Seong Heo, Hannah P. Leuhmann, Davide Scozzi, Antanisha Parks, Ramsey Hachem, Derek E. Byers, Laneshia K. Tague, Hrishikesh S. Kulkarni, Marlene Cano, Brian W. Wong, Wenjun Li, Howard J. Huang, Alexander S. Krupnick, Daniel Kreisel, Yongjian Liu, Andrew E. Gelman
Summary: The study reveals that extracorporeal photophoresis can reduce bronchiolitis obliterans syndrome (BOS) incidence and inhibit transplant rejection by modulating the functional plasticity of alveolar macrophages. This discovery uncovers a novel therapeutic mechanism.
JOURNAL OF CLINICAL INVESTIGATION
(2022)
Article
Oncology
Shoichi Nakamura, Kenoki Ohuchida, Yoshiki Ohtsubo, Yutaka Yamada, Chikanori Tsutsumi, Sho Okuda, Kyoko Hisano, Yuki Mochida, Tomohiko Shinkawa, Chika Iwamoto, Nobuhiro Torata, Yusuke Mizuuchi, Koji Shindo, Kohei Nakata, Taiki Moriyama, Takehiro Torisu, Eishi Nagai, Takashi Morisaki, Takanari Kitazono, Yoshinao Oda, Masafumi Nakamura
Summary: Investigated the functional heterogeneity of tumour-infiltrating B lymphocytes (TIL-Bs) in oesophageal squamous cell carcinoma (ESCC) and found that the function of TIL-Bs is enhanced after chemotherapy. The expression of IGKC is associated with improved prognosis in ESCC.
CLINICAL AND TRANSLATIONAL MEDICINE
(2023)
Article
Biology
Jayne E. Wiarda, Julian M. Trachsel, Sathesh K. Sivasankaran, Christopher K. Tuggle, Crystal L. Loving
Summary: This study identified various cell types in the porcine ileum using single-cell RNA sequencing and compared them with cells in the human and murine ileum. The researchers discovered porcine-specific lymphocyte subsets and revealed their distribution in the intestine. Additionally, they found that activated and effector lymphocytes were abundant in the porcine ileum but scarce in the periphery, indicating tissue-specific and/or activation-associated gene expression. The study also defined gene signatures for innate lymphoid cells in pigs and highlighted their similarities to human innate lymphoid cells. Overall, this research uncovers novel lymphocyte subsets in pigs and emphasizes the usefulness of pigs in intestinal research applications.
LIFE SCIENCE ALLIANCE
(2022)
Article
Rheumatology
Yusuke Takeshima, Yukiko Iwasaki, Masahiro Nakano, Yuta Narushima, Mineto Ota, Yasuo Nagafuchi, Shuji Sumitomo, Tomohisa Okamura, Keith Elkon, Kazuyoshi Ishigaki, Akari Suzuki, Yuta Kochi, Kazuhiko Yamamoto, Keishi Fujio
Summary: This study revealed the importance of oxidative phosphorylation/mitochondrial dysfunction in SLE memory B cells through transcriptomic, epigenomic, and genomic analysis. The PRDX6 gene was identified as a key driver in SLE B cells. Furthermore, the OXPHOS signature was associated with type I IFN signaling-related genes and correlated with SLE organ damage and specific clinical phenotypes.
ANNALS OF THE RHEUMATIC DISEASES
(2022)
Article
Gastroenterology & Hepatology
Chao Zhang, Jiesheng Li, Yongqian Cheng, Fanping Meng, Jin-Wen Song, Xing Fan, Hongtao Fan, Jing Li, Yu-Long Fu, Ming-Ju Zhou, Wei Hu, Si-Yu Wang, Yuan-Jie Fu, Ji-Yuan Zhang, Ruo-Nan Xu, Ming Shi, Xueda Hu, Zemin Zhang, Xianwen Ren, Fu-Sheng Wang
Summary: In this study, the comprehensive immune responses in different phases of HBV infection were analyzed using single-cell RNA sequencing. The results showed that both immune active and acute recovery phases were characterized by high levels of exhausted CD8+ T cells in the liver. Significant cell-cell interactions were observed between these exhausted T cells and regulatory CD4+ T cells, as well as between T cells and macrophages. Specific subsets of CD8+ T cells were expanded during the acute recovery phase, providing a potential marker for viral resolution. This study provides important insights into the immunopathogenesis of HBV and the development of effective therapeutic strategies.
Article
Endocrinology & Metabolism
Hao Zhang, Renkai Wang, Guangchao Wang, Bo Zhang, Chao Wang, Di Li, Chen Ding, Qiang Wei, Zhenyu Fan, Hao Tang, Fang Ji
Summary: B cells in the bone marrow microenvironment play a crucial role in fracture healing by inhibiting excessive bone regeneration through the production of osteoblast inhibitors. Their numbers fluctuate during different stages of fracture healing, impacting the overall bone regrowth process.
FRONTIERS IN ENDOCRINOLOGY
(2021)
Article
Immunology
Heng-Mo Rong, Han-Yu-Jie Kang, Zhao-Hui Tong
Summary: This study aimed to investigate the metabolic changes in Pneumocystis infection and the metabolic abnormalities in BAFF-R-deficient mice with Pneumocystis infection. The results showed that many metabolites, mainly lipids and lipid-like molecules, were dysregulated in Pneumocystis-infected mice. In addition, B-cell development and function might be associated with lipid metabolism. Conclusion: Metabolism plays a vital role in the immune response to Pneumocystis infection.
JOURNAL OF INFLAMMATION RESEARCH
(2023)
Article
Multidisciplinary Sciences
Sofija Vlasevska, Laura Garcia-Ibanez, Romain Duval, Antony B. Holmes, Rahat Jahan, Bowen Cai, Andrew Kim, Tongwei Mo, Katia Basso, Rajesh K. Soni, Govind Bhagat, Riccardo Dalla-Favera, Laura Pasqualucci
Summary: Heterozygous inactivating mutations of KMT2D and CREBBP are common in B cell lymphoma, and they co-occur in a significant number of follicular lymphoma and EZB/C3 diffuse large B cell lymphoma cases. The combination of haploinsufficiency of Crebbp and Kmt2d promotes the expansion of abnormally polarized germinal centers, which is an early event in lymphoma development. These findings highlight the functional and biochemical interaction between Crebbp and Kmt2d, and its implications for the treatment of lymphomas with enhancer defects induced by their combined loss.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2023)
Article
Cell Biology
Lili Du, Wenbo Deng, Shanshan Zeng, Pei Xu, Lijun Huang, Yingyu Liang, Yang Wang, Hui Xu, Jingman Tang, Shilei Bi, Lizi Zhang, Yulian Li, Luwen Ren, Lin Lin, Weinan Deng, Mingxing Liu, Jingsi Chen, Haibin Wang, Dunjin Chen
Summary: The research shows that abnormal cell composition and communication in the decidua during early pregnancy are associated with RSA, leading to stromal cell demise and pregnancy failure. These findings provide valuable insights for understanding the pathology of RSA and may help in preventing pregnancy loss.
CELL PROLIFERATION
(2021)
Article
Allergy
Hui Li, Huaqi Wang, Leon Sokulsky, Shaoxia Liu, Rui Yang, Xiaojie Liu, Lujia Zhou, Juan Li, Chun Huang, Fangfang Li, Xu Lei, Hongxia Jia, Jiuling Cheng, Fuguang Li, Ming Yang, Guojun Zhang
Summary: This study identified significantly elevated levels of monocytes, CD8(+) T cells, and macrophages in the bronchoalveolar lavage fluid of patients with asthma exacerbation. Additionally, a complicated molecular framework involving a set of cytokines and intracellular transduction regulators shared across multiple cell clusters was discovered. Moreover, core exacerbation-associated modules activated included pathways such as eukaryotic initiation factor 2 signaling and C-X-C chemokine receptor type 4 signaling in specific cell populations associated with infection.
JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
(2021)
Article
Immunology
Yi-Jiang Song, Yanyang Xu, Chuangzhong Deng, Xiaojun Zhu, Jianchang Fu, Hongmin Chen, Jinchang Lu, Huaiyuan Xu, Guohui Song, Qinglian Tang, Jin Wang
Summary: This study established a new classification system for osteosarcoma based on the gene expression profile of the tumor microenvironment, identifying two molecular subtypes associated with prognosis, S1 (infiltration type) and S2 (escape type). The study found that immune and stromal infiltrates were more abundant in subtype S1 compared to subtype S2, and certain immune checkpoint markers were associated with prognosis in subtype S1. Furthermore, the study confirmed the results using a validation set and assessed correlations between fibroblast percentage and clinical responses to chemotherapy in osteosarcoma primary tumors.
FRONTIERS IN IMMUNOLOGY
(2021)
Article
Cell Biology
Kristen P. D'Elia, Hanna Hameedy, Dena Goldblatt, Paul Frazel, Mercer Kriese, Yunlu Zhu, Kyla R. Hamling, Koichi Kawakami, Shane A. Liddelow, David Schoppik, Jeremy S. Dasen
Summary: This study uses single-cell RNA profiling to identify molecular signatures for different subtypes of motor neurons (MNs) and explores how MNs acquire functional subtype-specific features during development. The researchers find that two transcription factors, Prdm16 and Mecom, are essential for the development of fast MNs and reveal the molecular diversity and intrinsic transcriptional codes of vertebrate axial MNs.