Molecular Phylogeny and SNP Variation of Polar Bears (Ursus maritimus), Brown Bears (U. arctos), and Black Bears (U. americanus) Derived from Genome Sequences

Genetic relationships of North American bears (Ursus) inferred from amplified fragment length polymorphisms and mitochondrial DNA sequences

(2013) M.A. Cronin et al.   CANADIAN JOURNAL OF ZOOLOGY

A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing

(2013) John E. McCormack et al.   PLoS One

Response to Comment on "Nuclear Genomic Sequences Reveal that Polar Bears Are an Old and Distinct Bear Lineage"

(2013) F. Hailer et al.   SCIENCE

Comment on "Nuclear Genomic Sequences Reveal that Polar Bears Are an Old and Distinct Bear Lineage"

(2013) S. Nakagome et al.   SCIENCE

Genomic Evidence for Island Population Conversion Resolves Conflicting Theories of Polar Bear Evolution

(2013) James A. Cahill et al.   PLoS Genetics

MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis

(2012) S. Kumar et al.   BIOINFORMATICS

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

(2012) R. Peakall et al.   BIOINFORMATICS

More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs

(2012) N. G. Crawford et al.   Biology Letters

An interglacial polar bear and an early Weichselian glaciation at Poolepynten, western Svalbard

(2012) Helena Alexanderson et al.   BOREAS

Genetic Relationships of Extant Brown Bears (Ursus arctos) and Polar Bears (Ursus maritimus)

(2012) Matthew A. Cronin et al.   JOURNAL OF HEREDITY

Estimating divergence times in large molecular phylogenies

(2012) K. Tamura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change

(2012) W. Miller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nuclear Genomic Sequences Reveal that Polar Bears Are an Old and Distinct Bear Lineage

(2012) F. Hailer et al.   SCIENCE

Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales

(2012) Brant C. Faircloth et al.   SYSTEMATIC BIOLOGY

Exploring uncertainty in the calibration of the molecular clock

(2011) R. C. M. Warnock et al.   Biology Letters

Ancient Hybridization and an Irish Origin for the Modern Polar Bear Matriline

(2011) Ceiridwen J. Edwards et al.   CURRENT BIOLOGY

Population fragmentation and inter-ecosystem movements of grizzly bears in western Canada and the northern United States

(2011) Michael F. Proctor et al.   WILDLIFE MONOGRAPHS

Discordant mitochondrial and nuclear gene phylogenies in emydid turtles: implications for speciation and conservation

(2010) JOHN J. WIENS et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

(2010) Liang Liu et al.   BMC EVOLUTIONARY BIOLOGY

Complete mitochondrial genome of a Pleistocene jawbone unveils the origin of polar bear

(2010) C. Lindqvist et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Late-Quaternary biogeographic scenarios for the brown bear (Ursus arctos), a wild mammal model species

(2010) John Davison et al.   QUATERNARY SCIENCE REVIEWS

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary

(2009) Johannes Krause et al.   BMC EVOLUTIONARY BIOLOGY

Predicting 21st-century polar bear habitat distribution from global climate models

(2009) George M. Durner et al.   ECOLOGICAL MONOGRAPHS

Bayesian Inference of Species Trees from Multilocus Data

(2009) J. Heled et al.   MOLECULAR BIOLOGY AND EVOLUTION

Mitochondrial DNA as a marker of molecular diversity: a reappraisal

(2009) N. GALTIER et al.   MOLECULAR ECOLOGY

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Genetic characterization of Kenai brown bears (Ursus arctos): microsatellite and mitochondrial DNA control region variation in brown bears of the Kenai Peninsula, south central Alaska

(2008) J. V. Jackson et al.   CANADIAN JOURNAL OF ZOOLOGY

Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet

(2008) C. Bon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large-Scale Appearance of Ultraconserved Elements in Tetrapod Genomes and Slowdown of the Molecular Clock

(2007) S. Stephen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Combined analysis of fourteen nuclear genes refines the Ursidae phylogeny

(2007) Marie Pagès et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION