Modeling the evolution of complex genetic systems: The gene network family tree

Predicting drug-target interactions using restricted Boltzmann machines

(2013) Yuhao Wang et al.   BIOINFORMATICS

Learning Multisensory Integration and Coordinate Transformation via Density Estimation

(2013) Joseph G. Makin et al.   PLoS Computational Biology

PHENOTYPIC PLASTICITY FACILITATES MUTATIONAL VARIANCE, GENETIC VARIANCE, AND EVOLVABILITY ALONG THE MAJOR AXIS OF ENVIRONMENTAL VARIATION

(2012) Jeremy A. Draghi et al.   EVOLUTION

Phenotype–genotype relation in Wagner's canalization model

(2012) Yann Le Cunff et al.   JOURNAL OF THEORETICAL BIOLOGY

Most Networks in Wagner's Model Are Cycling

(2012) Ricardo Pinho et al.   PLoS One

Phenotypic plasticity can facilitate adaptive evolution in gene regulatory circuits

(2011) Carlos Espinosa-Soto et al.   BMC EVOLUTIONARY BIOLOGY

A history of phenotypic plasticity accelerates adaptation to a new environment

(2011) J. L. FIERST   JOURNAL OF EVOLUTIONARY BIOLOGY

Sexual Dimorphism Increases Evolvability in a Genetic Regulatory Network

(2010) Janna L. Fierst   Evolutionary Biology

Deep Learning and Its Applications to Signal and Information Processing [Exploratory DSP

(2010) Dong Yu et al.   IEEE SIGNAL PROCESSING MAGAZINE

Oscillating Gene Expression Determines Competence for Periodic Arabidopsis Root Branching

(2010) Miguel A. Moreno-Risueno et al.   SCIENCE

Specialization Can Drive the Evolution of Modularity

(2010) Carlos Espinosa-Soto et al.   PLoS Computational Biology

Robustness: mechanisms and consequences

(2009) Joanna Masel et al.   TRENDS IN GENETICS

Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks

(2009) João F. Matias Rodrigues et al.   PLoS Computational Biology

DYNAMICS OF HYBRID INCOMPATIBILITY IN GENE NETWORKS IN A CONSTANT ENVIRONMENT

(2008) Michael E. Palmer et al.   EVOLUTION

The evolutionary dynamics of evolvability in a gene network model

(2008) J. DRAGHI et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Chaotic gene regulatory networks can be robust against mutations and noise

(2008) Volkan Sevim et al.   JOURNAL OF THEORETICAL BIOLOGY

Representational Power of Restricted Boltzmann Machines and Deep Belief Networks

(2008) Nicolas Le Roux et al.   NEURAL COMPUTATION

An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution

(2008) Elhanan Borenstein et al.   PLoS Computational Biology