Cracking the Kranz enigma with systems biology

Predicting C4 Photosynthesis Evolution: Modular, Individually Adaptive Steps on a Mount Fuji Fitness Landscape

(2013) David Heckmann et al.   CELL

Leaf venation: structure, function, development, evolution, ecology and applications in the past, present and future

(2013) Lawren Sack et al.   NEW PHYTOLOGIST

The Arabidopsis leaf provascular cell transcriptome is enriched in genes with roles in vein patterning

(2013) Neeru Gandotra et al.   PLANT JOURNAL

Genome-wide transcript analysis of early maize leaf development reveals gene cohorts associated with the differentiation of C4Kranz anatomy

(2013) Peng Wang et al.   PLANT JOURNAL

A Developmental Transcriptional Network for Maize Defines Coexpression Modules

(2013) G. S. Downs et al.   PLANT PHYSIOLOGY

Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination

(2013) W.-Y. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photorespiration and the Evolution of C4Photosynthesis

(2012) Rowan F. Sage et al.   Annual Review of Plant Biology

Scarecrow Plays a Role in Establishing Kranz Anatomy in Maize Leaves

(2012) Thomas L. Slewinski et al.   PLANT AND CELL PHYSIOLOGY

Ontogeny of the Maize Shoot Apical Meristem

(2012) E. M. Takacs et al.   PLANT CELL

Systems Analysis of Plant Functional, Transcriptional, Physical Interaction, and Metabolic Networks

(2012) George W. Bassel et al.   PLANT CELL

You're so vein: bundle sheath physiology, phylogeny and evolution in C3 and C4 plants

(2012) HOWARD GRIFFITHS et al.   PLANT CELL AND ENVIRONMENT

Individual Maize Chromosomes in the C3 Plant Oat Can Increase Bundle Sheath Cell Size and Vein Density

(2012) B. J. Tolley et al.   PLANT PHYSIOLOGY

Characterizing Regulatory and Functional Differentiation between Maize Mesophyll and Bundle Sheath Cells by Transcriptomic Analysis

(2012) Y.-M. Chang et al.   PLANT PHYSIOLOGY

Evolution of GOLDEN2-LIKE gene function in C3 and C4 plants

(2012) Peng Wang et al.   PLANTA

The SHORT-ROOT protein acts as a mobile, dose-dependent signal in patterning the ground tissue

(2012) K. Koizumi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anatomical enablers and the evolution of C4photosynthesis in grasses

(2012) Pascal-Antoine Christin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Development of C4 Rice: Current Progress and Future Challenges

(2012) S. von Caemmerer et al.   SCIENCE

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

The grass leaf developmental gradient as a platform for a systems understanding of the anatomical specialization of C4 leaves

(2011) T. Nelson   JOURNAL OF EXPERIMENTAL BOTANY

The occurrence of C2 photosynthesis in Euphorbia subgenus Chamaesyce (Euphorbiaceae)

(2011) T. L. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

The C4 plant lineages of planet Earth

(2011) R. F. Sage et al.   JOURNAL OF EXPERIMENTAL BOTANY

A plastidial sodium-dependent pyruvate transporter

(2011) Tsuyoshi Furumoto et al.   NATURE

Regulatory mechanisms underlying C4 photosynthesis

(2011) Lin Wang et al.   NEW PHYTOLOGIST

C4Cycles: Past, Present, and Future Research on C4Photosynthesis

(2011) Jane A. Langdale   PLANT CELL

Systems Analysis of a Maize Leaf Developmental Gradient Redefines the Current C4 Model and Provides Candidates for Regulation

(2011) T. R. Pick et al.   PLANT CELL

Evolution of C4Photosynthesis in the GenusFlaveria: How Many and Which Genes Does It Take to Make C4?

(2011) Udo Gowik et al.   PLANT CELL

Characterization of C3-C4 intermediate species in the genus Heliotropium L. (Boraginaceae): anatomy, ultrastructure and enzyme activity

(2011) RIYADH MUHAIDAT et al.   PLANT CELL AND ENVIRONMENT

Multiple Arabidopsis genes primed for recruitment into C4 photosynthesis

(2011) Kaisa Kajala et al.   PLANT JOURNAL

On the Inside

(2011) P. V. Minorsky   PLANT PHYSIOLOGY

Genome-Wide Direct Target Analysis Reveals a Role for SHORT-ROOT in Root Vascular Patterning through Cytokinin Homeostasis

(2011) H. Cui et al.   PLANT PHYSIOLOGY

Genetic dissection of the biotic stress response using a genome-scale gene network for rice

(2011) I. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Independent and Parallel Recruitment of Preexisting Mechanisms Underlying C4 Photosynthesis

(2011) N. J. Brown et al.   SCIENCE

The Regulation of Gene Expression Required for C4Photosynthesis

(2010) Julian M. Hibberd et al.   Annual Review of Plant Biology

Simultaneous activation of SHR and ATHB8 expression defines switch to preprocambial cell state in Arabidopsis leaf development

(2010) Jason Gardiner et al.   DEVELOPMENTAL DYNAMICS

COMPLEX EVOLUTIONARY TRANSITIONS AND THE SIGNIFICANCE OF C3-C4 INTERMEDIATE FORMS OF PHOTOSYNTHESIS IN MOLLUGINACEAE

(2010) Pascal-Antoine Christin et al.   EVOLUTION

Expression profiling and proteomic analysis of isolated photosynthetic cells of the non-Kranz C4speciesBienertia sinuspersici

(2010) Joonho Park et al.   FUNCTIONAL PLANT BIOLOGY

Expression of DOF genes identifies early stages of vascular development in Arabidopsis leaves

(2010) Jason Gardiner et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Cell signalling by microRNA165/6 directs gene dose-dependent root cell fate

(2010) Annelie Carlsbecker et al.   NATURE

Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana

(2010) Insuk Lee et al.   NATURE BIOTECHNOLOGY

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

Structural and Metabolic Transitions of C4 Leaf Development and Differentiation Defined by Microscopy and Quantitative Proteomics in Maize

(2010) W. Majeran et al.   PLANT CELL

Evolution of C4 Photosynthesis--Looking for the Master Switch

(2010) P. Westhoff et al.   PLANT PHYSIOLOGY

C4GEM, a Genome-Scale Metabolic Model to Study C4 Plant Metabolism

(2010) C. G. de Oliveira Dal'Molin et al.   PLANT PHYSIOLOGY

Reconstruction of Metabolic Pathways, Protein Expression, and Homeostasis Machineries across Maize Bundle Sheath and Mesophyll Chloroplasts: Large-Scale Quantitative Proteomics Using the First Maize Genome Assembly

(2010) G. Friso et al.   PLANT PHYSIOLOGY

An mRNA Blueprint for C4 Photosynthesis Derived from Comparative Transcriptomics of Closely Related C3 and C4 Species

(2010) A. Brautigam et al.   PLANT PHYSIOLOGY

Shifts in leaf vein density through accelerated vein formation in C4Flaveria (Asteraceae)

(2009) Athena D. McKown et al.   ANNALS OF BOTANY

Omics meet networks—using systems approaches to infer regulatory networks in plants

(2009) Miguel A Moreno-Risueno et al.   CURRENT OPINION IN PLANT BIOLOGY

Regulation of preprocambial cell state acquisition by auxin signaling in Arabidopsis leaves

(2009) T. J. Donner et al.   DEVELOPMENT

Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

(2009) BJ��RN USADEL et al.   PLANT CELL AND ENVIRONMENT

Transcriptional activation of the maize endosperm transfer cell-specific gene BETL1 by ZmMRP-1 is enhanced by two C2H2 zinc finger-containing proteins

(2009) Joaquín Royo et al.   PLANTA

Control of Leaf and Vein Development by Auxin

(2009) E. Scarpella et al.   Cold Spring Harbor Perspectives in Biology

Systems Approaches to Identifying Gene Regulatory Networks in Plants

(2008) Terri A. Long et al.   Annual Review of Cell and Developmental Biology

What is the maximum efficiency with which photosynthesis can convert solar energy into biomass?

(2008) Xin-Guang Zhu et al.   CURRENT OPINION IN BIOTECHNOLOGY

Using C4 photosynthesis to increase the yield of rice—rationale and feasibility

(2008) Julian M Hibberd et al.   CURRENT OPINION IN PLANT BIOLOGY

Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana

(2008) Jalean Joyanne Petricka et al.   PLANT JOURNAL

Comparative Proteomics of Chloroplast Envelopes from C3 and C4 Plants Reveals Specific Adaptations of the Plastid Envelope to C4 Photosynthesis and Candidate Proteins Required for Maintaining C4 Metabolite Fluxes

(2008) A. Brautigam et al.   PLANT PHYSIOLOGY

Deregulation of Maize C4 Photosynthetic Development in a Mesophyll Cell-Defective Mutant

(2008) S. Covshoff et al.   PLANT PHYSIOLOGY

Arabidopsis Stomatal Initiation Is Controlled by MAPK-Mediated Regulation of the bHLH SPEECHLESS

(2008) G. R. Lampard et al.   SCIENCE

Oligocene CO2 Decline Promoted C4 Photosynthesis in Grasses

(2007) Pascal-Antoine Christin et al.   CURRENT BIOLOGY