Lack of parallel genetic patterns underlying the repeated ecological divergence of beach and stream-spawning kokanee salmon

Transcriptome-wide comparison of sequence variation in divergent ecotypes of kokanee salmon

(2013) Matthew A Lemay et al.   BMC GENOMICS

Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species

(2012) Kai N. Stölting et al.   MOLECULAR ECOLOGY

Genome divergence during evolutionary diversification as revealed in replicate lake-stream stickleback population pairs

(2012) MARIUS ROESTI et al.   MOLECULAR ECOLOGY

The probability of genetic parallelism and convergence in natural populations

(2012) G. L. Conte et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The genomics of speciation-with-gene-flow

(2012) Jeffrey L. Feder et al.   TRENDS IN GENETICS

Single nucleotide polymorphisms unravel hierarchical divergence and signatures of selection among Alaskan sockeye salmon (Oncorhynchus nerka) populations

(2011) Daniel Gomez-Uchida et al.   BMC EVOLUTIONARY BIOLOGY

GLOBAL ANALYSIS OF GENES INVOLVED IN FRESHWATER ADAPTATION IN THREESPINE STICKLEBACKS (GASTEROSTEUS ACULEATUS)

(2011) Jacquelin DeFaveri et al.   EVOLUTION

Detection of outlier loci and their utility for fisheries management

(2011) Michael A. Russello et al.   Evolutionary Applications

Can AFLP genome scans detect small islands of differentiation? The case of shell sculpture variation in the periwinkle Echinolittorina hawaiiensis

(2011) K. A. TICE et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evidence of neutral and adaptive genetic divergence between European trout populations sampled along altitudinal gradients

(2011) I. KELLER et al.   MOLECULAR ECOLOGY

Comparison ofFSToutlier tests for SNP loci under selection

(2011) SHAWN R. NARUM et al.   Molecular Ecology Resources

Molecular spandrels: tests of adaptation at the genetic level

(2011) Rowan D. H. Barrett et al.   NATURE REVIEWS GENETICS

Population genomics of parallel phenotypic evolution in stickleback across stream-lake ecological transitions

(2011) B. E. Deagle et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Temporal and Geographic Genetic Divergence: Characterizing Sockeye Salmon Populations in the Chignik Watershed, Alaska, Using Single-Nucleotide Polymorphisms

(2011) Elisabeth K. Creelman et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches

(2010) Mohamed Salem et al.   BMC GENOMICS

Identification of Local- and Habitat-Dependent Selection: Scanning Functionally Important Genes in Nine-Spined Sticklebacks (Pungitius pungitius)

(2010) T. Shikano et al.   MOLECULAR BIOLOGY AND EVOLUTION

SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.)

(2010) SÉBASTIEN RENAUT et al.   MOLECULAR ECOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Natural selection and the genetics of adaptation in threespine stickleback

(2010) D. Schluter et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Speciation genetics: current status and evolving approaches

(2010) J. B. W. Wolf et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Contrasting genetic paths to morphological and physiological evolution

(2010) B.-Y. Liao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags

(2010) Paul A. Hohenlohe et al.   PLoS Genetics

Ecological speciation! Or the lack thereof?This Perspective is based on the author’s J.C. Stevenson Memorial Lecture delivered at the Canadian Conference for Fisheries Research in Halifax, Nova Scotia, January 2008.

(2009) Andrew P. Hendry   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Divergent selection and heterogeneous genomic divergence

(2009) PATRIK NOSIL et al.   MOLECULAR ECOLOGY

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Natural selection in action during speciation

(2009) S. Via   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

LOSITAN: A workbench to detect molecular adaptation based on a Fst-outlier method

(2008) Tiago Antao et al.   BMC BIOINFORMATICS

Local and systemic gene expression responses of Atlantic salmon (Salmo salar L.) to infection with the salmon louse (Lepeophtheirus salmonis)

(2008) Stanko Skugor et al.   BMC GENOMICS

SELECTION AND GENOMIC DIFFERENTIATION DURING ECOLOGICAL SPECIATION: ISOLATING THE CONTRIBUTIONS OF HOST ASSOCIATION VIA A COMPARATIVE GENOME SCAN OF NEOCHLAMISUS BEBBIANAE LEAF BEETLES

(2008) Scott P. Egan et al.   EVOLUTION

Population genomics and speciation

(2008) Roger K. Butlin   GENETICA

Identification of Selective Sweeps in Closely Related Populations of the House Mouse Based on Microsatellite Scans

(2008) Meike Teschke et al.   GENETICS

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

CXCR4 is required for the quiescence of primitive hematopoietic cells

(2008) Yuchun Nie et al.   JOURNAL OF EXPERIMENTAL MEDICINE

The genetic mosaic suggests a new role for hitchhiking in ecological speciation

(2008) SARA VIA et al.   MOLECULAR ECOLOGY

The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonussp.)

(2008) J. ST-CYR et al.   MOLECULAR ECOLOGY

Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce

(2008) MARIE-CLAIRE NAMROUD et al.   MOLECULAR ECOLOGY