probeBase—an online resource for rRNA-targeted oligonucleotide probes and primers: new features 2016

Use of Hybridization Chain Reaction-FluorescentIn SituHybridization To Track Gene Expression by Both Partners during Initiation of Symbiosis

(2015) K. Nikolakakis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis

(2015) Liyou Wu et al.   BMC MICROBIOLOGY

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

(2015) Craig W. Herbold et al.   Frontiers in Microbiology

Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut

(2014) Henning Seedorf et al.   CELL

Database resources of the National Center for Biotechnology Information

(2014)   NUCLEIC ACIDS RESEARCH

Type material in the NCBI Taxonomy Database

(2014) Scott Federhen   NUCLEIC ACIDS RESEARCH

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

A Straightforward DOPE (Double Labeling of Oligonucleotide Probes)-FISH (FluorescenceIn SituHybridization) Method for Simultaneous Multicolor Detection of Six Microbial Populations

(2012) Faris Behnam et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylotype-level 16S rRNA analysis reveals new bacterial indicators of health state in acute murine colitis

(2012) David Berry et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

PCR Amplification-Independent Methods for Detection of Microbial Communities by the High-Density Microarray PhyloChip

(2011) Kristen M. DeAngelis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Systems-level analysis of microbial community organization through combinatorial labeling and spectral imaging

(2011) A. M. Valm et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global patterns in the biogeography of bacterial taxa

(2010) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation

(2010) L. Dethlefsen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

probeCheck - a central resource for evaluating oligonucleotide probe coverage and specificity

(2008) Alexander Loy et al.   ENVIRONMENTAL MICROBIOLOGY

16S rRNA gene-based phylogenetic microarray for simultaneous identification of members of the genusBurkholderia

(2008) Susan Schönmann et al.   ENVIRONMENTAL MICROBIOLOGY

Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques

(2008) Rudolf Amann et al.   NATURE REVIEWS MICROBIOLOGY