Estimate of within population incremental selection through branch imbalance in lineage trees

The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales

(2015) Gur Yaari et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

The Restricted DH Gene Reading Frame Usage in the Expressed Human Antibody Repertoire Is Selected Based upon its Amino Acid Content

(2013) J. Benichou et al.   JOURNAL OF IMMUNOLOGY

Coalescent Tree Imbalance and a Simple Test for Selective Sweeps Based on Microsatellite Variation

(2013) Haipeng Li et al.   PLoS Computational Biology

Multi Step Selection in Ig H Chains is Initially Focused on CDR3 and Then on Other CDR Regions

(2013) Gilad Liberman et al.   Frontiers in Immunology

Rep-Seq: uncovering the immunological repertoire through next-generation sequencing

(2011) Jennifer Benichou et al.   IMMUNOLOGY

Immune-Induced Evolutionary Selection Focused on a Single Reading Frame in Overlapping Hepatitis B Virus Proteins

(2011) Y. Maman et al.   JOURNAL OF VIROLOGY

Signal peptides and trans-membrane regions are broadly immunogenic and have high CD8+ T cell epitope densities: Implications for vaccine development

(2011) Riva Kovjazin et al.   MOLECULAR IMMUNOLOGY

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Bacteria Modulate the CD8+ T Cell Epitope Repertoire of Host Cytosol-Exposed Proteins to Manipulate the Host Immune Response

(2011) Yaakov Maman et al.   PLoS Computational Biology

High-throughput DNA sequencing - concepts and limitations

(2010) Martin Kircher et al.   BIOESSAYS

MHC-I prediction using a combination of T cell epitopes and MHC-I binding peptides

(2010) Tal Vider-Shalit et al.   JOURNAL OF IMMUNOLOGICAL METHODS

RNA sequencing: advances, challenges and opportunities

(2010) Fatih Ozsolak et al.   NATURE REVIEWS GENETICS

TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations

(2010) Federico Abascal et al.   NUCLEIC ACIDS RESEARCH

The HIV hide and seek game: an immunogenomic analysis of the HIV epitope repertoire

(2009) Tal Vider-Shalit et al.   AIDS

Viruses selectively mutate their CD8+ T-cell epitopes--a large-scale immunomic analysis

(2009) T. Vider-Shalit et al.   BIOINFORMATICS

Human self-protein CD8+T-cell epitopes are both positively and negatively selected

(2009) Michal Almani et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Taking Advantage: High-Affinity B Cells in the Germinal Center Have Lower Death Rates, but Similar Rates of Division, Compared to Low-Affinity Cells

(2009) S. M. Anderson et al.   JOURNAL OF IMMUNOLOGY

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

Precise score for the prediction of peptides cleaved by the proteasome

(2008) Ido Ginodi et al.   BIOINFORMATICS

Improved methods for detecting selection by mutation analysis of Ig V region sequences

(2008) Uri Hershberg et al.   INTERNATIONAL IMMUNOLOGY

Rapid Evolution and the Importance of Recombination to the Gastroenteric Pathogen Campylobacter jejuni

(2008) D. J. Wilson et al.   MOLECULAR BIOLOGY AND EVOLUTION

IMGT(R), the international ImMunoGeneTics information system(R)

(2008) M.-P. Lefranc et al.   NUCLEIC ACIDS RESEARCH