Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the host
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Sequence-independent characterization of viruses based on the pattern of viral small RNAs produced by the host
Authors
Keywords
-
Journal
NUCLEIC ACIDS RESEARCH
Volume 43, Issue 13, Pages 6191-6206
Publisher
Oxford University Press (OUP)
Online
2015-06-04
DOI
10.1093/nar/gkv587
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses
- (2015) Ci-Xiu Li et al. eLife
- Virome Analysis of Amblyomma americanum, Dermacentor variabilis, and Ixodes scapularis Ticks Reveals Novel Highly Divergent Vertebrate and Invertebrate Viruses
- (2014) R. Tokarz et al. JOURNAL OF VIROLOGY
- Biogeography and individuality shape function in the human skin metagenome
- (2014) Julia Oh et al. NATURE
- Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs inArabidopsis
- (2014) Mengji Cao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Annotation of long non-coding RNAs expressed in Collaborative Cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcripts
- (2014) Laurence Josset et al. RNA Biology
- Standards for Sequencing Viral Genomes in the Era of High-Throughput Sequencing
- (2014) J. T. Ladner et al. mBio
- The Perils of Pathogen Discovery: Origin of a Novel Parvovirus-Like Hybrid Genome Traced to Nucleic Acid Extraction Spin Columns
- (2013) S. N. Naccache et al. JOURNAL OF VIROLOGY
- RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence
- (2013) Nathan Pumplin et al. NATURE REVIEWS MICROBIOLOGY
- Pfam: the protein families database
- (2013) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Autologous Antibody Capture to Enrich Immunogenic Viruses for Viral Discovery
- (2013) Bas B. Oude Munnink et al. PLoS One
- Novel Virus Discovery and Genome Reconstruction from Field RNA Samples Reveals Highly Divergent Viruses in Dipteran Hosts
- (2013) Shelley Cook et al. PLoS One
- Antiviral RNA Interference in Mammalian Cells
- (2013) P. V. Maillard et al. SCIENCE
- Identification of RNase L-Dependent, 3'-End-Modified, Viral Small RNAs in Sindbis Virus-Infected Mammalian Cells
- (2013) E. Girardi et al. mBio
- Economic and Disease Burden of Dengue in Southeast Asia
- (2013) Donald S. Shepard et al. PLoS Neglected Tropical Diseases
- Functional Specialization of the Small Interfering RNA Pathway in Response to Virus Infection
- (2013) Joao Trindade Marques et al. PLoS Pathogens
- Sindbis virus induces the production of a novel class of endogenous siRNAs in Aedes aegypti mosquitoes
- (2012) Z. N. Adelman et al. INSECT MOLECULAR BIOLOGY
- Broad RNA Interference-Mediated Antiviral Immunity and Virus-Specific Inducible Responses in Drosophila
- (2012) C. Kemp et al. JOURNAL OF IMMUNOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Arbovirus-Derived piRNAs Exhibit a Ping-Pong Signature in Mosquito Cells
- (2012) Nicolas Vodovar et al. PLoS One
- Production of Virus-Derived Ping-Pong-Dependent piRNA-like Small RNAs in the Mosquito Soma
- (2012) Elaine M. Morazzani et al. PLoS Pathogens
- The mosquito Aedes aegypti has a large genome size and high transposable element load but contains a low proportion of transposon-specific piRNAs
- (2011) Peter Arensburger et al. BMC GENOMICS
- RNA-Based Immunity Terminates Viral Infection in Adult Drosophila in the Absence of Viral Suppression of RNA Interference: Characterization of Viral Small Interfering RNA Populations in Wild-Type and Mutant Flies
- (2011) Y.-H. Han et al. JOURNAL OF VIROLOGY
- Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees
- (2011) Dongying Wu et al. PLoS One
- Identification of a Novel Marine Fish Virus, Singapore Grouper Iridovirus-Encoded MicroRNAs Expressed in Grouper Cells by Solexa Sequencing
- (2011) Yang Yan et al. PLoS One
- Discovery of DNA Viruses in Wild-Caught Mosquitoes Using Small RNA High throughput Sequencing
- (2011) Maijuan Ma et al. PLoS One
- Integrative Deep Sequencing of the Mouse Lung Transcriptome Reveals Differential Expression of Diverse Classes of Small RNAs in Response to Respiratory Virus Infection
- (2011) X. Peng et al. mBio
- Strand-specific deep sequencing of the transcriptome
- (2010) A. P. Vivancos et al. GENOME RESEARCH
- RNAi-mediated immunity provides strong protection against the negative-strand RNA vesicular stomatitis virus in Drosophila
- (2010) S. Mueller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Virus discovery by deep sequencing and assembly of virus-derived small silencing RNAs
- (2010) Q. Wu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Specialized piRNA Pathways Act in Germline and Somatic Tissues of the Drosophila Ovary
- (2009) Colin D. Malone et al. CELL
- The role of RNAi and microRNAs in animal virus replication and antiviral immunity
- (2009) J. L. Umbach et al. GENES & DEVELOPMENT
- Drosophila A virus is an unusual RNA virus with a T=3 icosahedral core and permuted RNA-dependent RNA polymerase
- (2009) R. L. Ambrose et al. JOURNAL OF GENERAL VIROLOGY
- Metagenomic Analysis of RNA Viruses in a Fresh Water Lake
- (2009) Appolinaire Djikeng et al. PLoS One
- Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals
- (2009) Dana Willner et al. PLoS One
- Complete viral genome sequence and discovery of novel viruses by deep sequencing of small RNAs: A generic method for diagnosis, discovery and sequencing of viruses
- (2009) Jan F. Kreuze et al. VIROLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Novel virus discovery in field-collected mosquito larvae using an improved system for rapid determination of viral RNA sequences (RDV ver4.0)
- (2008) Takuya Yamao et al. ARCHIVES OF VIROLOGY
- Mechanism of Induction and Suppression of Antiviral Immunity Directed by Virus-Derived Small RNAs in Drosophila
- (2008) Roghiyh Aliyari et al. Cell Host & Microbe
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Alphavirus-derived small RNAs modulate pathogenesis in disease vector mosquitoes
- (2008) K. M. Myles et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Rapid Identification of Known and New RNA Viruses from Animal Tissues
- (2008) Joseph G. Victoria et al. PLoS Pathogens
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started