INGA: protein function prediction combining interaction networks, domain assignments and sequence similarity

Identification of Four NovelPCDH19Mutations and Prediction of Their Functional Impact

(2014) Emanuela Leonardi et al.   ANNALS OF HUMAN GENETICS

Protocadherin-17 Mediates Collective Axon Extension by Recruiting Actin Regulator Complexes to Interaxonal Contacts

(2014) Shuichi Hayashi et al.   DEVELOPMENTAL CELL

Protein function prediction by massive integration of evolutionary analyses and multiple data sources

(2013) Domenico Cozzetto et al.   BMC BIOINFORMATICS

Bioinformatics analysis of the epitope regions for norovirus capsid protein

(2013) Liping Chen et al.   BMC BIOINFORMATICS

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Activities at the Universal Protein Resource (UniProt)

(2013)   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

Genome-scale phylogenetic function annotation of large and diverse protein families

(2011) B. E. Engelhardt et al.   GENOME RESEARCH

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences

(2011) D. Piovesan et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Protocadherin-19 and N-cadherin interact to control cell movements during anterior neurulation

(2010) Sayantanee Biswas et al.   JOURNAL OF CELL BIOLOGY

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

SUPERFAMILY 1.75 including a domain-centric gene ontology method

(2010) D. A. de Lima Morais et al.   NUCLEIC ACIDS RESEARCH

ESG: extended similarity group method for automated protein function prediction

(2009) Meghana Chitale et al.   BIOINFORMATICS

Exploiting structural classifications for function prediction: towards a domain grammar for protein function

(2009) Benoît H Dessailly et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Rapid Annotation of Anonymous Sequences from Genome Projects Using Semantic Similarities and a Weighting Scheme in Gene Ontology

(2009) Paolo Fontana et al.   PLoS One

Protein function annotation by homology-based inference

(2009) Yaniv Loewenstein et al.   GENOME BIOLOGY

X-linked protocadherin 19 mutations cause female-limited epilepsy and cognitive impairment

(2008) Leanne M Dibbens et al.   NATURE GENETICS

InterPro: the integrative protein signature database

(2008) S. Hunter et al.   NUCLEIC ACIDS RESEARCH

Arrangements in the modular evolution of proteins

(2008) Andrew D. Moore et al.   TRENDS IN BIOCHEMICAL SCIENCES