The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community

Forty-Four Novel Protein-Coding Loci Discovered Using a Proteomics Informed by Transcriptomics (PIT) Approach in Rat Male Germ Cells1

(2014) Sophie Chocu et al.   BIOLOGY OF REPRODUCTION

High-Resolution Profiling of Novel Transcribed Regions During Rat Spermatogenesis1

(2014) Frédéric Chalmel et al.   BIOLOGY OF REPRODUCTION

HelicoBase: a Helicobacter genomic resource and analysis platform

(2014) Siew Choo et al.   BMC GENOMICS

Chromatin and Transcription Transitions of Mammalian Adult Germline Stem Cells and Spermatogenesis

(2014) Saher Sue Hammoud et al.   Cell Stem Cell

The evolution of lncRNA repertoires and expression patterns in tetrapods

(2014) Anamaria Necsulea et al.   NATURE

The UCSC Genome Browser database: 2015 update

(2014) Kate R. Rosenbloom et al.   NUCLEIC ACIDS RESEARCH

An atlas of chromatoid body components

(2014) O. Meikar et al.   RNA

VibrioBase: A Model for Next-Generation Genome and Annotation Database Development

(2014) Siew Woh Choo et al.   TheScientificWorldJOURNAL

StaphyloBase: a specialized genomic resource for the staphylococcal research community

(2014) H. Heydari et al.   Database-The Journal of Biological Databases and Curation

High-Performance Computing and Big Data in Omics-Based Medicine

(2014) Ivan Merelli et al.   Biomed Research International

CrossMap: a versatile tool for coordinate conversion between genome assemblies

(2013) Hao Zhao et al.   BIOINFORMATICS

An Ancient Transcription Factor Initiates the Burst of piRNA Production during Early Meiosis in Mouse Testes

(2013) Xin Zhiguo Li et al.   MOLECULAR CELL

Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa

(2013) Serap Erkek et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

NGSmethDB: an updated genome resource for high quality, single-cytosine resolution methylomes

(2013) Stefanie Geisen et al.   NUCLEIC ACIDS RESEARCH

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

(2013) Danielle Welter et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Profiling of the Murine Testis during the First Wave of Spermatogenesis

(2013) Asta Laiho et al.   PLoS One

MabsBase: A Mycobacterium abscessus Genome and Annotation Database

(2013) Hamed Heydari et al.   PLoS One

Dynamics of 5-hydroxymethylcytosine during mouse spermatogenesis

(2013) Haiyun Gan et al.   Nature Communications

Cellular Source and Mechanisms of High Transcriptome Complexity in the Mammalian Testis

(2013) Magali Soumillon et al.   Cell Reports

Secondary Variants in Individuals Undergoing Exome Sequencing: Screening of 572 Individuals Identifies High-Penetrance Mutations in Cancer-Susceptibility Genes

(2012) Jennifer J. Johnston et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Ovarian Kaleidoscope Database: Ten Years and Beyond1

(2012) Aaron J. Hsueh et al.   BIOLOGY OF REPRODUCTION

A brief introduction to web-based genome browsers

(2012) J. Wang et al.   BRIEFINGS IN BIOINFORMATICS

The UCSC genome browser and associated tools

(2012) R. M. Kuhn et al.   BRIEFINGS IN BIOINFORMATICS

Bromodomain-dependent stage-specific male genome programming by Brdt

(2012) Jonathan Gaucher et al.   EMBO JOURNAL

Genetic recombination is directed away from functional genomic elements in mice

(2012) Kevin Brick et al.   NATURE

NGS analyses by visualization with Trackster

(2012) Jeremy Goecks et al.   NATURE BIOTECHNOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

SpermatogenesisOnline 1.0: a resource for spermatogenesis based on manual literature curation and genome-wide data mining

(2012) Yuanwei Zhang et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

Direct Iterative Protein Profiling (DIPP) - an Innovative Method for Large-scale Protein Detection Applied to Budding Yeast Mitosis

(2011) Régis Lavigne et al.   MOLECULAR & CELLULAR PROTEOMICS

Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa

(2010) Urszula Brykczynska et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

NGSmethDB: a database for next-generation sequencing single-cytosine-resolution DNA methylation data

(2010) M. Hackenberg et al.   NUCLEIC ACIDS RESEARCH

Testicular postgenomics: targeting the regulation of spermatogenesis

(2010) P. Calvel et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6

(2010) A. Lardenois et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle

(2010) A. Lardenois et al.   Database-The Journal of Biological Databases and Curation

High-resolution transcription atlas of the mitotic cell cycle in budding yeast

(2010) Marina V Granovskaia et al.   GENOME BIOLOGY

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

GonadSAGE: a comprehensive SAGE database for transcript discovery on male embryonic gonad development

(2009) T.-L. Lee et al.   BIOINFORMATICS

JBrowse: A next-generation genome browser

(2009) M. E. Skinner et al.   GENOME RESEARCH

Bidirectional promoters generate pervasive transcription in yeast

(2009) Zhenyu Xu et al.   NATURE

GermSAGE: a comprehensive SAGE database for transcript discovery on male germ cell development

(2008) T.-L. Lee et al.   NUCLEIC ACIDS RESEARCH