RoboOligo: software for mass spectrometry data to support manual and de novo sequencing of post-transcriptionally modified ribonucleic acids

Plant, Animal, and Fungal Micronutrient Queuosine Is Salvaged by Members of the DUF2419 Protein Family

(2014) Rémi Zallot et al.   ACS Chemical Biology

Systematic identification of tRNAome and its dynamics inLactococcus lactis

(2014) Pranav Puri et al.   MOLECULAR MICROBIOLOGY

The global identification of tRNA isoacceptors by targeted tandem mass spectrometry

(2013) Collin Wetzel et al.   ANALYST

Functional Role of Methylation of G518 of the 16S rRNA 530 Loop by GidB in Mycobacterium tuberculosis

(2013) Sharon Y. Wong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Structural and Mechanistic Basis for Enhanced Translational Efficiency by 2-Thiouridine at the tRNA Anticodon Wobble Position

(2013) Annia Rodriguez-Hernandez et al.   JOURNAL OF MOLECULAR BIOLOGY

Lessons inde novopeptide sequencing by tandem mass spectrometry

(2013) Katalin F. Medzihradszky et al.   MASS SPECTROMETRY REVIEWS

Life without tRNAIle-lysidine synthetase: translation of the isoleucine codon AUA in Bacillus subtilis lacking the canonical tRNA2Ile

(2013) Caroline Köhrer et al.   NUCLEIC ACIDS RESEARCH

Collision-induced dissociation of oligonucleotide anions fully modified at the 2'-position of the ribose: 2'-F/-H and 2'-F/-H/-OMe mix-mers

(2012) Yang Gao et al.   JOURNAL OF MASS SPECTROMETRY

GenoMass software: a tool based on electrospray ionization tandem mass spectrometry for characterization and sequencing of oligonucleotide adducts

(2012) Vaneet K Sharma et al.   JOURNAL OF MASS SPECTROMETRY

OMA and OPA—Software-Supported Mass Spectra Analysis of Native and Modified Nucleic Acids

(2012) Adrien Nyakas et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

MODOMICS: a database of RNA modification pathways—2013 update

(2012) Magdalena A. Machnicka et al.   NUCLEIC ACIDS RESEARCH

Diversity of Archaeosine Synthesis in Crenarchaeota

(2011) Gabriela Phillips et al.   ACS Chemical Biology

3-(3-amino-3-carboxypropyl)-5,6-Dihydrouridine is one of two novel post-transcriptional modifications in tRNALys(UUU) from Trypanosoma brucei

(2011) Jesper S. Krog et al.   FEBS Journal

Tandem Mass Spectrometry of Modified and Platinated Oligoribonucleotides

(2011) Adrien Nyakas et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Informatics for mass spectrometry-based RNA analysis

(2011) Hiroshi Nakayama et al.   MASS SPECTROMETRY REVIEWS

Formation of m 2 G6 in Methanocaldococcus jannaschii tRNA catalyzed by the novel methyltransferase Trm14

(2011) Sheena Menezes et al.   NUCLEIC ACIDS RESEARCH

An automated algorithm for sequence confirmation of chemically modified oligonucleotides by tandem mass spectrometry

(2010) Matthias Kretschmer et al.   ANALYTICAL BIOCHEMISTRY

Tandem mass spectrometric de novo sequencing of oligonucleotides using simulated annealing for stochastic optimization

(2010) Herbert Oberacher et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

The RNA modification database, RNAMDB: 2011 update

(2010) W. A. Cantara et al.   NUCLEIC ACIDS RESEARCH

Identification of RNA molecules by specific enzyme digestion and mass spectrometry: software for and implementation of RNA mass mapping

(2009) Rune Matthiesen et al.   NUCLEIC ACIDS RESEARCH

Ariadne: a database search engine for identification and chemical analysis of RNA using tandem mass spectrometry data

(2009) Hiroshi Nakayama et al.   NUCLEIC ACIDS RESEARCH

Mass spectrometry of the fifth nucleoside: A review of the identification of pseudouridine in nucleic acids

(2008) Anita Durairaj et al.   ANALYTICA CHIMICA ACTA

Improving CMC-derivatization of pseudouridine in RNA for mass spectrometric detection

(2008) Anita Durairaj et al.   ANALYTICA CHIMICA ACTA

GenoMass - a computer software for automated identification of oligonucleotide DNA adducts from LC-MS analysis of DNA digests

(2008) Qing Liao et al.   JOURNAL OF MASS SPECTROMETRY