Heterogeneous dynamics in DNA site discrimination by the structurally homologous DNA-binding domains of ETS-family transcription factors

Binding studies of a large antiviral polyamide to a natural HPV sequence

(2014) Gaofei He et al.   BIOCHIMIE

Pioneer transcription factors in cell reprogramming

(2014) Makiko Iwafuchi-Doi et al.   GENES & DEVELOPMENT

Mechanistic Heterogeneity in Site Recognition by the Structurally Homologous DNA-binding Domains of the ETS Family Transcription Factors Ets-1 and PU.1

(2014) Shuo Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape

(2014) Richard I Sherwood et al.   NATURE BIOTECHNOLOGY

Synergy of aromatic residues and phosphoserines within the intrinsically disordered DNA-binding inhibitory elements of the Ets-1 transcription factor

(2014) G. Desjardins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping small DNA ligand hydroxyl radical footprinting and affinity cleavage products for capillary electrophoresis

(2013) Gaofei He et al.   ANALYTICAL BIOCHEMISTRY

ETS transcription factors in hematopoietic stem cell development

(2013) Aldo Ciau-Uitz et al.   BLOOD CELLS MOLECULES AND DISEASES

Probing the Electrostatics and Pharmacological Modulation of Sequence-Specific Binding by the DNA-Binding Domain of the ETS Family Transcription Factor PU.1: A Binding Affinity and Kinetics Investigation

(2013) Manoj Munde et al.   JOURNAL OF MOLECULAR BIOLOGY

Mechanisms of in vivo binding site selection of the hematopoietic master transcription factor PU.1

(2013) Thu-Hang Pham et al.   NUCLEIC ACIDS RESEARCH

PU.1 Level-Directed Chromatin Structure Remodeling at the Irf8 Gene Drives Dendritic Cell Commitment

(2013) Jörg Schönheit et al.   Cell Reports

DNA Binding Regulates the Self-Association of the ETS Domain of PU.1 in a Sequence-Dependent Manner

(2012) Gregory M. K. Poon   BIOCHEMISTRY

Promoter scanning of the human COX-2 gene with 8-ring polyamides: Unexpected weakening of polyamide–DNA binding and selectivity by replacing an internal N-Me-pyrrole with β-alanine

(2012) James K. Bashkin et al.   BIOCHIMIE

Dynamic epigenetic enhancer signatures reveal key transcription factors associated with monocytic differentiation states

(2012) T.-H. Pham et al.   BLOOD

Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors

(2012) J. Wang et al.   GENOME RESEARCH

Sequence Discrimination by DNA-binding Domain of ETS Family Transcription Factor PU.1 Is Linked to Specific Hydration of Protein-DNA Interface

(2012) Gregory M. K. Poon   JOURNAL OF BIOLOGICAL CHEMISTRY

The ETS Transcription Factors ELK1 and GABPA Regulate Different Gene Networks to Control MCF10A Breast Epithelial Cell Migration

(2012) Zaneta Odrowaz et al.   PLoS One

Genomic and Biochemical Insights into the Specificity of ETS Transcription Factors

(2011) Peter C. Hollenhorst et al.   Annual Review of Biochemistry

Pioneer transcription factors: establishing competence for gene expression

(2011) K. S. Zaret et al.   GENES & DEVELOPMENT

A Large Gene Network in Immature Erythroid Cells Is Controlled by the Myeloid and B Cell Transcriptional Regulator PU.1

(2011) Sandeep N. Wontakal et al.   PLoS Genetics

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

(2010) Gong-Hong Wei et al.   EMBO JOURNAL

Identification and Characterization of Enhancers Controlling the Inflammatory Gene Expression Program in Macrophages

(2010) Serena Ghisletti et al.   IMMUNITY

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

70% efficiency of bistate molecular machines explained by information theory, high dimensional geometry and evolutionary convergence

(2010) T. D. Schneider   NUCLEIC ACIDS RESEARCH

Transcriptomic profiling identifies a PU.1 regulatory network in macrophages

(2009) Karin Weigelt et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

A Recurrent Network Involving the Transcription Factors PU.1 and Gfi1 Orchestrates Innate and Adaptive Immune Cell Fates

(2009) Chauncey J. Spooner et al.   IMMUNITY

DNA Specificity Determinants Associate with Distinct Transcription Factor Functions

(2009) Peter C. Hollenhorst et al.   PLoS Genetics

The Affinity of Ets-1 for DNA is Modulated by Phosphorylation Through Transient Interactions of an Unstructured Region

(2008) Gregory M. Lee et al.   JOURNAL OF MOLECULAR BIOLOGY

High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis

(2008) Somdeb Mitra et al.   NUCLEIC ACIDS RESEARCH

RAPIDO: a web server for the alignment of protein structures in the presence of conformational changes

(2008) R. Mosca et al.   NUCLEIC ACIDS RESEARCH

Predicting ultraviolet spectrum of single stranded and double stranded deoxyribonucleic acids

(2007) Andrey V. Tataurov et al.   BIOPHYSICAL CHEMISTRY