Targeted cross-linking-mass spectrometry determines vicinal interactomes within heterogeneous RNP complexes

Towards understanding nuclear pore complex architecture and dynamics in the age of integrative structural analysis

(2015) Ed Hurt et al.   CURRENT OPINION IN CELL BIOLOGY

The structure of Erb1-Ytm1 complex reveals the functional importance of a high-affinity binding between two β-propellers during the assembly of large ribosomal subunits in eukaryotes

(2015) Marcin Wegrecki et al.   NUCLEIC ACIDS RESEARCH

Domain organization within the nuclear export factor Mex67:Mtr2 generates an extended mRNA binding surface

(2015) Shintaro Aibara et al.   NUCLEIC ACIDS RESEARCH

The complete structure of the 55S mammalian mitochondrial ribosome

(2015) B. J. Greber et al.   SCIENCE

A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains

(2014) M. Gamalinda et al.   GENES & DEVELOPMENT

Nucleoporin FG Domains Facilitate mRNP Remodeling at the Cytoplasmic Face of the Nuclear Pore Complex

(2014) Rebecca L. Adams et al.   GENETICS

mRNA Nuclear Export in Yeast

(2013) C. A. Niño et al.   CHEMICAL REVIEWS

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

(2013) John L. Woolford et al.   GENETICS

Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export

(2013) Yoshitaka Matsuo et al.   NATURE

To the pore and through the pore: A story of mRNA export kinetics

(2012) Marlene Oeffinger et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Identification of cross-linked peptides from complex samples

(2012) Bing Yang et al.   NATURE METHODS

Structure of the pre-60S ribosomal subunit with nuclear export factor Arx1 bound at the exit tunnel

(2012) Bettina Bradatsch et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Crosslinking-MS analysis reveals RNA polymerase I domain architecture and basis of rRNA cleavage

(2012) Stefan Jennebach et al.   NUCLEIC ACIDS RESEARCH

Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae

(2012) Jason Talkish et al.   NUCLEIC ACIDS RESEARCH

Ribosomal proteins L7 and L8 function in concert with six A3 assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits

(2012) J. Jakovljevic et al.   RNA

Xwalk: computing and visualizing distances in cross-linking experiments

(2011) Abdullah Kahraman et al.   BIOINFORMATICS

A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

(2011) Sander Granneman et al.   EMBO JOURNAL

Regulation of the Dbp5 ATPase cycle in mRNP remodeling at the nuclear pore: a lively new paradigm for DEAD-box proteins

(2011) S. Ledoux et al.   GENES & DEVELOPMENT

A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export

(2011) Ben Montpetit et al.   NATURE

The Structure of the Eukaryotic Ribosome at 3.0 A Resolution

(2011) A. Ben-Shem et al.   SCIENCE

Ribosomopathies: human disorders of ribosome dysfunction

(2010) A. Narla et al.   BLOOD

Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA–protein cross-linking

(2010) Sander Granneman et al.   EMBO JOURNAL

A Bimodal Distribution of Two Distinct Categories of Intrinsically Disordered Structures with Separate Functions in FG Nucleoporins

(2010) Justin Yamada et al.   MOLECULAR & CELLULAR PROTEOMICS

A new cross-linking strategy: protein interaction reporter (PIR) technology for protein–protein interaction studies

(2010) Xiaoting Tang et al.   Molecular BioSystems

The AAA-ATPase Rea1 Drives Removal of Biogenesis Factors during Multiple Stages of 60S Ribosome Assembly

(2010) Jochen Baßler et al.   MOLECULAR CELL

The HADDOCK web server for data-driven biomolecular docking

(2010) Sjoerd J de Vries et al.   Nature Protocols

The nuclear pore complex: bridging nuclear transport and gene regulation

(2010) Caterina Strambio-De-Castillia et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

I-TASSER server for protein 3D structure prediction

(2008) Yang Zhang   BMC BIOINFORMATICS

Interactions among Ytm1, Erb1, and Nop7 Required for Assembly of the Nop7-Subcomplex in Yeast Preribosomes

(2008) Lan Tang et al.   MOLECULAR BIOLOGY OF THE CELL

Determination of disulfide bond patterns in lamininβ1 chain N-terminal domains by nano-high-performance liquid chromatography/matrix-assisted laser desorption/ionization time-of-flight/time-of-flight mass spectrometry

(2008) Stefan Kalkhof et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY