Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA

Nanopore-Based Assay for Detection of Methylation in Double-Stranded DNA Fragments

(2015) Jiwook Shim et al.   ACS Nano

Challenges in DNA motion control and sequence readout using nanopore devices

(2015) Spencer Carson et al.   NANOTECHNOLOGY

Temperature and Electrolyte Optimization of the α-Hemolysin Latch Sensing Zone for Detection of Base Modification in Double-Stranded DNA

(2014) Robert P. Johnson et al.   BIOPHYSICAL JOURNAL

Smooth DNA Transport through a Narrowed Pore Geometry

(2014) Spencer Carson et al.   BIOPHYSICAL JOURNAL

Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA

(2014) Toni Pfaffeneder et al.   Nature Chemical Biology

Differentiation of Short, Single-Stranded DNA Homopolymers in Solid-State Nanopores

(2013) Kimberly Venta et al.   ACS Nano

On the distribution of DNA translocation times in solid-state nanopores: an analysis using Schrödinger’s first-passage-time theory

(2013) Daniel Y Ling et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA

(2013) A. H. Laszlo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands

(2013) J. Schreiber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of Methylation on the Physical Properties of DNA

(2012) Alberto Pérez et al.   BIOPHYSICAL JOURNAL

Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems

(2011) Jejoong Yoo et al.   Journal of Physical Chemistry Letters

Cytosine methylation alters DNA mechanical properties

(2011) Philip M. D. Severin et al.   NUCLEIC ACIDS RESEARCH

Molecular Origins of DNA Flexibility: Sequence Effects on Conformational and Mechanical Properties

(2011) Vanessa Ortiz et al.   PHYSICAL REVIEW LETTERS

Identification of epigenetic DNA modifications with a protein nanopore

(2010) Emma V. B. Wallace et al.   CHEMICAL COMMUNICATIONS

The distribution of DNA translocation times in solid-state nanopores

(2010) Jiali Li et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Discrimination of Methylcytosine from Hydroxymethylcytosine in DNA Molecules

(2010) Meni Wanunu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Unraveling Single-Stranded DNA in a Solid-State Nanopore

(2010) Stefan W. Kowalczyk et al.   NANO LETTERS

Nanopore Based Sequence Specific Detection of Duplex DNA for Genomic Profiling

(2010) Alon Singer et al.   NANO LETTERS

Deciphering ionic current signatures of DNA transport through a nanopore

(2010) Aleksei Aksimentiev   Nanoscale

Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors

(2010) Meni Wanunu et al.   Nature Nanotechnology

Microscopic Mechanics of Hairpin DNA Translocation through Synthetic Nanopores

(2009) Jeffrey Comer et al.   BIOPHYSICAL JOURNAL

Nanoelectromechanics of Methylated DNA in a Synthetic Nanopore

(2009) U. Mirsaidov et al.   BIOPHYSICAL JOURNAL

CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields

(2009) K. Vanommeslaeghe et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

3D-DART: a DNA structure modelling server

(2009) M. van Dijk et al.   NUCLEIC ACIDS RESEARCH

DNA Translocation Governed by Interactions with Solid-State Nanopores

(2008) Meni Wanunu et al.   BIOPHYSICAL JOURNAL