Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria

ChIP analysis unravels an exceptionally wide distribution of DNA binding sites for the NtcA transcription factor in a heterocyst-forming cyanobacterium

(2014) Silvia Picossi et al.   BMC GENOMICS

Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction

(2014) Antonio L.C. Gomes et al.   GENOME RESEARCH

HupB, a Nucleoid-Associated Protein of Mycobacterium tuberculosis, Is Modified by Serine/Threonine Protein Kinases In Vivo

(2014) M. Gupta et al.   JOURNAL OF BACTERIOLOGY

Functional Dissection of Intersubunit Interactions in the EspR Virulence Regulator of Mycobacterium tuberculosis

(2014) B. Blasco et al.   JOURNAL OF BACTERIOLOGY

Genomic mapping of cAMP receptor protein (CRPMt) inMycobacterium tuberculosis: relation to transcriptional start sites and the role of CRPMtas a transcription factor

(2014) Christina Kahramanoglou et al.   NUCLEIC ACIDS RESEARCH

Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network

(2014) Devon M. Fitzgerald et al.   PLoS Genetics

Non-canonical protein-DNA interactions identified by ChIP are not artifacts

(2013) Richard P Bonocora et al.   BMC GENOMICS

Mapping Yeast Transcriptional Networks

(2013) T. R. Hughes et al.   GENETICS

Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon

(2013) A. M. Stringer et al.   JOURNAL OF BACTERIOLOGY

A Multicopper Oxidase Is Required for Copper Resistance in Mycobacterium tuberculosis

(2013) J. L. Rowland et al.   JOURNAL OF BACTERIOLOGY

The Mycobacterium tuberculosis regulatory network and hypoxia

(2013) James E. Galagan et al.   NATURE

Evolution of high-level ethambutol-resistant tuberculosis through interacting mutations in decaprenylphosphoryl-β-D-arabinose biosynthetic and utilization pathway genes

(2013) Hassan Safi et al.   NATURE GENETICS

Cyclic di-AMP: another second messenger enters the fray

(2013) Rebecca M. Corrigan et al.   NATURE REVIEWS MICROBIOLOGY

Multifunctional essentiality of succinate metabolism in adaptation to hypoxia in Mycobacterium tuberculosis

(2013) H. Eoh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exonic Transcription Factor Binding Directs Codon Choice and Affects Protein Evolution

(2013) A. B. Stergachis et al.   SCIENCE

Definition and annotation of (myco)bacterial non-coding RNA

(2013) Gyanu Lamichhane et al.   TUBERCULOSIS

Database resources for the tuberculosis community

(2013) Jocelyne M. Lew et al.   TUBERCULOSIS

Genome-wide Mapping of Transcriptional Start Sites Defines an Extensive Leaderless Transcriptome in Mycobacterium tuberculosis

(2013) Teresa Cortes et al.   Cell Reports

Activating Transcription in Bacteria

(2012) David J. Lee et al.   Annual Review of Microbiology

Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP, (p)ppGpp signaling in bacteria and implications in pathogenesis

(2012) Dimpy Kalia et al.   CHEMICAL SOCIETY REVIEWS

Long-Range Transcriptional Control of an Operon Necessary for Virulence-Critical ESX-1 Secretion in Mycobacterium tuberculosis

(2012) D. M. Hunt et al.   JOURNAL OF BACTERIOLOGY

High-resolution detection of DNA binding sites of the global transcriptional regulator GlxR in Corynebacterium glutamicum

(2012) B. Jungwirth et al.   MICROBIOLOGY-SGM

LeuO is a global regulator of gene expression inSalmonella entericaserovar Typhimurium

(2012) Shane C. Dillon et al.   MOLECULAR MICROBIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Resuscitation-promoting Factors (Rpf): In Search of Inhibitors

(2012) Arseny S. Kaprelyants et al.   PROTEIN AND PEPTIDE LETTERS

Mycobacterium tuberculosis WhiB1 represses transcription of the essential chaperonin GroEL2

(2012) Melanie R. Stapleton et al.   TUBERCULOSIS

Virulence Regulator EspR of Mycobacterium tuberculosis Is a Nucleoid-Associated Protein

(2012) Benjamin Blasco et al.   PLoS Pathogens

Reversible Acetylation and Inactivation ofMycobacterium tuberculosisAcetyl-CoA Synthetase Is Dependent on cAMP

(2011) Hua Xu et al.   BIOCHEMISTRY

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Synergy between the N-terminal and C-terminal domains of Mycobacterium tuberculosis HupB is essential for high-affinity binding, DNA supercoiling and inhibition of RecA-promoted strand exchange

(2011) N. Sharadamma et al.   FEBS Journal

Dysregulation of serine biosynthesis contributes to the growth defect of a Mycobacterium tuberculosis crp mutant

(2011) Guangchun Bai et al.   MOLECULAR MICROBIOLOGY

The myriad roles of cyclic AMP in microbial pathogens: from signal to sword

(2011) Kathleen A. McDonough et al.   NATURE REVIEWS MICROBIOLOGY

Copper resistance is essential for virulence of Mycobacterium tuberculosis

(2011) F. Wolschendorf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide transcription factor binding: beyond direct target regulation

(2011) Kyle L. MacQuarrie et al.   TRENDS IN GENETICS

Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis

(2011) Kristine B. Arnvig et al.   PLoS Pathogens

Fumarate Reductase Activity Maintains an Energized Membrane in Anaerobic Mycobacterium tuberculosis

(2011) Shinya Watanabe et al.   PLoS Pathogens

High-Resolution Phenotypic Profiling Defines Genes Essential for Mycobacterial Growth and Cholesterol Catabolism

(2011) Jennifer E. Griffin et al.   PLoS Pathogens

Mycobacterium tuberculosisWhiB1 is an essential DNA-binding protein with a nitric oxide-sensitive iron–sulfur cluster

(2010) Laura J. Smith et al.   BIOCHEMICAL JOURNAL

Sigma Factor F Does Not Prevent Rifampin Inhibition of RNA Polymerase or Cause Rifampin Tolerance in Mycobacterium tuberculosis

(2010) R. C. Hartkoorn et al.   JOURNAL OF BACTERIOLOGY

cAMP-regulated Protein Lysine Acetylases in Mycobacteria

(2010) Subhalaxmi Nambi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Mechanistic Insight into the Nitrosylation of the [4Fe−4S] Cluster of WhiB-like Proteins

(2010) Jason C. Crack et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Multiple small RNAs identified in Mycobacterium bovis BCG are also expressed in Mycobacterium tuberculosis and Mycobacterium smegmatis

(2010) J. M. DiChiara et al.   NUCLEIC ACIDS RESEARCH

Unique Flexibility in Energy Metabolism Allows Mycobacteria to Combat Starvation and Hypoxia

(2010) Michael Berney et al.   PLoS One

Lsr2 is a nucleoid-associated protein that targets AT-rich sequences and virulence genes in Mycobacterium tuberculosis

(2010) B. R. G. Gordon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TubercuList – 10 years after

(2010) Jocelyne M. Lew et al.   TUBERCULOSIS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Mycobacterium tuberculosiscAMP Receptor Protein (Rv3676) Differs from the Escherichia coli Paradigm in Its cAMP Binding and DNA Binding Properties and Transcription Activation Properties

(2009) Melanie Stapleton et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Role for the ATP7A Copper-transporting ATPase in Macrophage Bactericidal Activity

(2009) Carine White et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Transcriptional control of the succinate dehydrogenase operon sdhCAB of Corynebacterium glutamicum by the cAMP-dependent regulator GlxR and the LuxR-type regulator RamA

(2009) Michael Bussmann et al.   JOURNAL OF BIOTECHNOLOGY

Identification of small RNAs inMycobacterium tuberculosis

(2009) Kristine B. Arnvig et al.   MOLECULAR MICROBIOLOGY

From Corynebacterium glutamicum to Mycobacterium tuberculosis--towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet

(2009) J. Krawczyk et al.   NUCLEIC ACIDS RESEARCH

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

cAMP levels withinMycobacterium tuberculosisandMycobacterium bovisBCG increase upon infection of macrophages

(2008) Guangchun Bai et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Single Nucleotide Polymorphisms That Cause Structural Changes in the Cyclic AMP Receptor Protein Transcriptional Regulator of the Tuberculosis Vaccine Strain Mycobacterium bovis BCG Alter Global Gene Expression without Attenuating Growth

(2008) D. M. Hunt et al.   INFECTION AND IMMUNITY

Expression of the Mycobacterium tuberculosis acr-Coregulated Genes from the DevR (DosR) Regulon Is Controlled by Multiple Levels of Regulation

(2008) H. M. Vasudeva-Rao et al.   INFECTION AND IMMUNITY

Cyclic AMP in Mycobacteria: Characterization and Functional Role of the Rv1647 Ortholog in Mycobacterium smegmatis

(2008) B. K. M. Dass et al.   JOURNAL OF BACTERIOLOGY

Lsr2 of Mycobacterium Represents a Novel Class of H-NS-Like Proteins

(2008) B. R. G. Gordon et al.   JOURNAL OF BACTERIOLOGY

Rv1675c (cmr) regulates intramacrophage and cyclic AMP-induced gene expression inMycobacterium tuberculosis-complex mycobacteria

(2008) Michaela A. Gazdik et al.   MOLECULAR MICROBIOLOGY

Lsr2 of Mycobacterium tuberculosis is a DNA-bridging protein

(2008) Jeffrey M. Chen et al.   NUCLEIC ACIDS RESEARCH