Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks

PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling

(2011) Gurkan Bebek et al.   BMC BIOINFORMATICS

The power of protein interaction networks for associating genes with diseases

(2010) Saket Navlakha et al.   BIOINFORMATICS

Functional characterization and topological modularity of molecular interaction networks

(2010) Jayesh Pandey et al.   BMC BIOINFORMATICS

Prediction and Testing of Biological Networks Underlying Intestinal Cancer

(2010) Vishal N. Patel et al.   PLoS One

Associating Genes and Protein Complexes with Disease via Network Propagation

(2010) Oron Vanunu et al.   PLoS Computational Biology

Disease candidate gene identification and prioritization using protein interaction networks

(2009) Jing Chen et al.   BMC BIOINFORMATICS

RRW: repeated random walks on genome-scale protein networks for local cluster discovery

(2009) Kathy Macropol et al.   BMC BIOINFORMATICS

Molecular Function Prediction Using Neighborhood Features

(2009) Petko Bogdanov et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Network-Based Method for Predicting Disease-Causing Genes

(2009) Shaul Karni et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The Negatome database: a reference set of non-interacting protein pairs

(2009) Pawel Smialowski et al.   NUCLEIC ACIDS RESEARCH

ToppGene Suite for gene list enrichment analysis and candidate gene prioritization

(2009) J. Chen et al.   NUCLEIC ACIDS RESEARCH

Information Flow Analysis of Interactome Networks

(2009) Patrycja Vasilyev Missiuro et al.   PLoS Computational Biology

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS

The Pleiotropic Phenotype of Apc Mutations in the Mouse: Allele Specificity and Effects of the Genetic Background

(2008) R. B. Halberg et al.   GENETICS

Protein networks in disease

(2008) T. Ideker et al.   GENOME RESEARCH

Using gene expression to investigate the genetic basis of complex disorders

(2008) A. C. Nica et al.   HUMAN MOLECULAR GENETICS

Network-based global inference of human disease genes

(2008) Xuebing Wu et al.   Molecular Systems Biology

Epithelial Pten is dispensable for intestinal homeostasis but suppresses adenoma development and progression after Apc mutation

(2008) Victoria Marsh et al.   NATURE GENETICS

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

Estimating the size of the human interactome

(2008) M. P. H. Stumpf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

NetGrep: fast network schema searches in interactomes

(2008) Eric Banks et al.   GENOME BIOLOGY