An Unbiased Adaptive Sampling Algorithm for the Exploration of RNA Mutational Landscapes Under Evolutionary Pressure

Phenotypic effect of mutations in evolving populations of RNA molecules

(2010) Michael Stich et al.   BMC EVOLUTIONARY BIOLOGY

Toward atomic accuracy in RNA design

(2010) Eric Westhof   NATURE METHODS

Controlled non-uniform random generation of decomposable structures

(2010) A. Denise et al.   THEORETICAL COMPUTER SCIENCE

A structural interpretation of the effect of GC-content on efficiency of RNA interference

(2009) Chi Chan et al.   BMC BIOINFORMATICS

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

(2009) Douglas H. Turner et al.   NUCLEIC ACIDS RESEARCH

Asymptotics of RNA Shapes

(2008) W.A. Lorenz et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

Automated motif extraction and classification in RNA tertiary structures

(2008) M. Djelloul et al.   RNA

Efficient Algorithms for Probing the RNA Mutation Landscape

(2008) Jérôme Waldispühl et al.   PLoS Computational Biology

The Ascent of the Abundant: How Mutational Networks Constrain Evolution

(2008) Matthew C. Cowperthwaite et al.   PLoS Computational Biology