Inferring Mechanisms of Compensation from E-MAP and SGA Data Using Local Search Algorithms for Max Cut

Extracting Between-Pathway Models from E-MAP Interactions Using Expected Graph Compression

(2011) David R. Kelley et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Modularity and directionality in genetic interaction maps

(2010) A. Jaimovich et al.   BIOINFORMATICS

Evaluating Between-Pathway Models with Expression Data

(2010) B.J. Hescott et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

HSP90 at the hub of protein homeostasis: emerging mechanistic insights

(2010) Mikko Taipale et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Genetic Landscape of a Cell

(2010) M. Costanzo et al.   SCIENCE

Functional Organization of the S. cerevisiae Phosphorylation Network

(2009) Dorothea Fiedler et al.   CELL

Fault Tolerance in Protein Interaction Networks: Stable Bipartite Subgraphs and Redundant Pathways

(2009) Arthur Brady et al.   PLoS One

Towards accurate imputation of quantitative genetic interactions

(2009) Igor Ulitsky et al.   GENOME BIOLOGY

From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions

(2008) Igor Ulitsky et al.   Molecular Systems Biology

Mapping Genetically Compensatory Pathways from Synthetic Lethal Interactions in Yeast

(2008) Xiaotu Ma et al.   PLoS One

Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast

(2008) A. Roguev et al.   SCIENCE

Functional Maps of Protein Complexes from Quantitative Genetic Interaction Data

(2008) Sourav Bandyopadhyay et al.   PLoS Computational Biology