Alignment-Free Sequence Comparison (II): Theoretical Power of Comparison Statistics

The Power of Detecting Enriched Patterns: An HMM Approach

(2010) Zhiyuan Zhai et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Alignment-Free Sequence Comparison (I): Statistics and Power

(2009) Gesine Reinert et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Characterizing the D2 Statistic: Word Matches in Biological Sequences

(2009) Sylvain Forêt et al.   Statistical Applications in Genetics and Molecular Biology

Approximate word matches between two random sequences

(2008) Conrad J. Burden et al.   ANNALS OF APPLIED PROBABILITY

Empirical distribution of k-word matches in biological sequences

(2008) Sylvain Forêt et al.   PATTERN RECOGNITION

Computational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs

(2008) Andra Ivan et al.   GENOME BIOLOGY