Integrative Analysis of Salmonellosis in Israel Reveals Association of Salmonella enterica Serovar 9,12:l,v:- with Extraintestinal Infections, Dissemination of Endemic S. enterica Serovar Typhimurium DT104 Biotypes, and Severe Underreporting of Outbreaks

National outbreaks of Salmonella infection in the UK, 2000–2011

(2013) K. S. HARKER et al.   EPIDEMIOLOGY AND INFECTION

SEPTICEMIC SALMONELLOSIS CAUSED BY SALMONELLA HESSAREK IN WINTERING AND MIGRATING SONG THRUSHES (TURDUS PHILOMELOS) IN SPAIN

(2013) Roser Velarde et al.   JOURNAL OF WILDLIFE DISEASES

Virulence Gene Profiling and Pathogenicity Characterization of Non-Typhoidal Salmonella Accounted for Invasive Disease in Humans

(2013) Jotham Suez et al.   PLoS One

Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts

(2013) A. E. Mather et al.   SCIENCE

Evolutionary Genomics of Salmonella enterica Subspecies

(2013) P. T. Desai et al.   mBio

Estimating the true incidence of campylobacteriosis and salmonellosis in the European Union, 2009

(2012) A. H. HAVELAAR et al.   EPIDEMIOLOGY AND INFECTION

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica

(2011) Henk C den Bakker et al.   BMC GENOMICS

Invasive nontyphoidal Salmonella disease

(2011) Melita A. Gordon   CURRENT OPINION IN INFECTIOUS DISEASES

Recent trends in the epidemiology of non-typhoidal Salmonella in Israel, 1999–2009

(2011) R. BASSAL et al.   EPIDEMIOLOGY AND INFECTION

RAxML and FastTree: Comparing Two Methods for Large-Scale Maximum Likelihood Phylogeny Estimation

(2011) Kevin Liu et al.   PLoS One

The Global Burden of NontyphoidalSalmonellaGastroenteritis

(2010) Shannon E. Majowicz et al.   CLINICAL INFECTIOUS DISEASES

So similar, yet so different: uncovering distinctive features in the genomes of Salmonella enterica serovars Typhimurium and Typhi

(2010) Sébastien C. Sabbagh et al.   FEMS MICROBIOLOGY LETTERS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

NontyphoidalSalmonellaSerovars Cause Different Degrees of Invasive Disease Globally

(2009) Gemma C. Langridge et al.   JOURNAL OF INFECTIOUS DISEASES

Occurrence and characterization of Salmonella enterica subspecies enterica serovar 9,12:l,v:- strains from Bulgaria, Denmark, and the United States

(2008) P. Petrov et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Transmission ofSalmonellabetween wildlife and meat-production animals in Denmark

(2008) M.N. Skov et al.   JOURNAL OF APPLIED MICROBIOLOGY

Salmonellosis Outcomes Differ Substantially by Serotype

(2008) Timothy F. Jones et al.   JOURNAL OF INFECTIOUS DISEASES

Epidemiologic attributes of invasive non-typhoidal Salmonella infections in Michigan, 1995–2001

(2007) M. Mokhtar Arshad et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES