A misplaced lncRNA causes brachydactyly in humans

Uncovering the role of genomic “dark matter” in human disease

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No-Nonsense Functions for Long Noncoding RNAs

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Functional and Mechanistic Diversity of Distal Transcription Enhancers

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Mechanisms of digit formation: Human malformation syndromes tell the story

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Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

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Variegated gene expression caused by cell-specific long-range DNA interactions

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Glioblastomas with oligodendroglial component-common origin of the different histological parts and genetic subclassification

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Deletion and Point Mutations of PTHLH Cause Brachydactyly Type E

(2010) Eva Klopocki et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Long Noncoding RNAs with Enhancer-like Function in Human Cells

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Transcriptional Enhancers in Animal Development and Evolution

(2010) Mike Levine   CURRENT BIOLOGY

RNA traffic control of chromatin complexes

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A unique H3K4me2 profile marks tissue-specific gene regulation

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Widespread transcription at neuronal activity-regulated enhancers

(2010) Tae-Kyung Kim et al.   NATURE

Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis

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Genomics tools for unraveling chromosome architecture

(2010) Bas van Steensel et al.   NATURE BIOTECHNOLOGY

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

(2010) Mitchell Guttman et al.   NATURE BIOTECHNOLOGY

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

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Genome organization influences partner selection for chromosomal rearrangements

(2010) Patrick J. Wijchers et al.   TRENDS IN GENETICS

Chromosome Territories

(2010) T. Cremer et al.   Cold Spring Harbor Perspectives in Biology

CTCF: Master Weaver of the Genome

(2009) Jennifer E. Phillips et al.   CELL

Fgf-Dependent Etv4/5 Activity Is Required for Posterior Restriction of Sonic hedgehog and Promoting Outgrowth of the Vertebrate Limb

(2009) Junhao Mao et al.   DEVELOPMENTAL CELL

A cis-regulatory site downregulates PTHLH in translocation t(8;12)(q13;p11.2) and leads to Brachydactyly Type E

(2009) Philipp G. Maass et al.   HUMAN MOLECULAR GENETICS

The combinations of polymorphisms in vitamin D receptor, osteoprotegerin and tumour necrosis factor superfamily member 11 genes are associated with bone mineral density

(2009) Simona Mencej-Bedrač et al.   JOURNAL OF MOLECULAR ENDOCRINOLOGY

Histone modifications at human enhancers reflect global cell-type-specific gene expression

(2009) Nathaniel D. Heintzman et al.   NATURE

Chromosomal Dynamics at the Shh Locus: Limb Bud-Specific Differential Regulation of Competence and Active Transcription

(2008) Takanori Amano et al.   DEVELOPMENTAL CELL

Gene associations: true romance or chance meeting in a nuclear neighborhood?

(2008) Jeanne B. Lawrence et al.   JOURNAL OF CELL BIOLOGY

Similar active genes cluster in specialized transcription factories

(2008) Meng Xu et al.   JOURNAL OF CELL BIOLOGY

High-resolution circular chromosome conformation capture assay

(2008) Anita Göndör et al.   Nature Protocols

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

Unique SMAD1/5/8 activity at the phalanx-forming region determines digit identity

(2008) T. Suzuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Polycomb Proteins Targeted by a Short Repeat RNA to the Mouse X Chromosome

(2008) J. Zhao et al.   SCIENCE