4.7 Article

Intragenic deletions of ALDH7A1 in pyridoxine-dependent epilepsy caused by Alu-Alu recombination

Journal

NEUROLOGY
Volume 85, Issue 9, Pages 756-762

Publisher

LIPPINCOTT WILLIAMS & WILKINS
DOI: 10.1212/WNL.0000000000001883

Keywords

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Funding

  1. Division of Pediatric Neurology, University of Washington
  2. Seattle Children's Hospital
  3. Career Award for Medical Scientists from the Burroughs Wellcome Fund
  4. NIH (National Institute of Neurological Disorders and Stroke) [R01 NS069605]
  5. Wellcome Trust
  6. Great Ormond Street Children's Charity
  7. UW Intellectual and Developmental Disabilities Research Center Genetics Core [NIH U54HD083091]
  8. Great Ormond Street Hospital Childrens Charity [V1216] Funding Source: researchfish

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Objective: To investigate the role of intragenic deletions of ALDH7A1 in patients with clinical and biochemical evidence of pyridoxine-dependent epilepsy but only a single identifiable mutation in ALDH7A1. Methods: We designed a custom oligonucleotide array with high-density probe coverage across the ALDH7A1 gene. We performed array comparative genomic hybridization in 6 patients with clinical and biochemical evidence of pyridoxine-dependent epilepsy but only a single detectable mutation in ALDH7A1 by sequence analysis. Results: We found partial deletions of ALDH7A1 in 5 of 6 patients. Breakpoint analysis reveals that the deletions are likely a result of Alu-Alu recombination in all cases. The density of Alu elements within introns of ALDH7A1 suggests susceptibility to recurrent rearrangement. Conclusion: Patients with clinical pyridoxine-dependent epilepsy and a single identifiable mutation in ALDH7A1 warrant further investigation for copy number changes involving the ALHD7A1 gene.

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