Exploring the sheep rumen microbiome for carbohydrate-active enzymes

Ruminal bacterial community shifts in grain-, sugar-, and histidine-challenged dairy heifers

(2014) H.M. Golder et al.   JOURNAL OF DAIRY SCIENCE

Temporal dynamics of fibrolytic and methanogenic rumen microorganisms during in situ incubation of switchgrass determined by 16S rRNA gene profiling

(2014) Hailan Piao et al.   Frontiers in Microbiology

A novel multifunctional cellulolytic enzyme screened from metagenomic resources representing ruminal bacteria

(2013) Kyong-Cheol Ko et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

Expression of Cellulosome Components and Type IV Pili within the Extracellular Proteome of Ruminococcus flavefaciens 007

(2013) Maša Vodovnik et al.   PLoS One

Nature’s bioreactor: the rumen as a model for biofuel production

(2013) Melissa R Christopherson et al.   Biofuels-UK

Comparative Survey of Rumen Microbial Communities and Metabolites across One Caprine and Three Bovine Groups, Using Bar-Coded Pyrosequencing and1H Nuclear Magnetic Resonance Spectroscopy

(2012) Hyo Jung Lee et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular tools for deciphering the microbial community structure and diversity in rumen ecosystem

(2012) Sunil Kumar Sirohi et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Mitigation of methane production from cattle by feeding cashew nut shell liquid

(2012) T. Shinkai et al.   JOURNAL OF DAIRY SCIENCE

Composition and Similarity of Bovine Rumen Microbiota across Individual Animals

(2012) Elie Jami et al.   PLoS One

Metagenomics of the Svalbard Reindeer Rumen Microbiome Reveals Abundance of Polysaccharide Utilization Loci

(2012) Phillip B. Pope et al.   PLoS One

Metagenomic Insights into the Fibrolytic Microbiome in Yak Rumen

(2012) Xin Dai et al.   PLoS One

Biomass Converting Enzymes as Industrial Biocatalysts for Fuels and Chemicals: Recent Developments

(2012) Matt D. Sweeney et al.   Catalysts

Functional Analyses of Multiple Lichenin-Degrading Enzymes from the Rumen Bacterium Ruminococcus albus 8

(2011) Michael Iakiviak et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools

(2011) Robert W. Li et al.   ENVIRONMENTAL MICROBIOLOGY

Complete Genome of the Cellulolytic Ruminal Bacterium Ruminococcus albus 7

(2011) G. Suen et al.   JOURNAL OF BACTERIOLOGY

Isolation of Succinivibrionaceae Implicated in Low Methane Emissions from Tammar Wallabies

(2011) P. B. Pope et al.   SCIENCE

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Changes to the rumen bacterial population of sheep with the addition of 2,4,6-trinitrotoluene to their diet

(2010) Sudeep Perumbakkam et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Manipulation of FASTQ data with Galaxy

(2010) D. Blankenberg et al.   BIOINFORMATICS

β-Glucosidases

(2010) James R. Ketudat Cairns et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Evaluation of bacterial diversity in the rumen and feces of cattle fed different levels of dried distillers grains plus solubles using bacterial tag-encoded FLX amplicon pyrosequencing1

(2010) T. R. Callaway et al.   JOURNAL OF ANIMAL SCIENCE

Transcriptomic Analyses of Xylan Degradation byPrevotella bryantiiand Insights into Energy Acquisition by Xylanolytic Bacteroidetes

(2010) Dylan Dodd et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

(2010) Janaki Purushe et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Strategies to reduce methane emissions from farmed ruminants grazing on pasture

(2010) Bryce M. Buddle et al.   VETERINARY JOURNAL

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

Metagenomic Pyrosequencing and Microbial Identification

(2009) J. F. Petrosino et al.   CLINICAL CHEMISTRY

Rumen Bacterial Diversity Dynamics Associated with Changing from Bermudagrass Hay to Grazed Winter Wheat Diets

(2009) Dipti W. Pitta et al.   MICROBIAL ECOLOGY

Isolation and characterization of novel cellulase genes from uncultured microorganisms in different environmental niches

(2009) Fengchao Wang et al.   MICROBIOLOGICAL RESEARCH

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probiotics in animal nutrition and health

(2009) F. Chaucheyras-Durand et al.   Beneficial Microbes

Plant Cell Wall Breakdown by Anaerobic Microorganisms from the Mammalian Digestive Tract

(2008) Harry J. Flint et al.   Annals of the New York Academy of Sciences

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS