Genome-scale reconstruction of Salinispora tropica CNB-440 metabolism to study strain-specific adaptation

Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path

(2014) Miguel A. Campodonico et al.   METABOLIC ENGINEERING

Optimizing genome-scale network reconstructions

(2014) Jonathan Monk et al.   NATURE BIOTECHNOLOGY

Salinispora pacifica sp. nov., an actinomycete from marine sediments

(2013) Lina Ahmed et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Biological Activity of Sporolides A and B fromSalinispora tropica:in silicoTarget Prediction Using Ligand-Based Pharmacophore Mapping andin vitroactivity Validation on HIV-1 Reverse Transcriptase

(2013) Kesavan Dineshkumar et al.   Chemical Biology & Drug Design

Bacterial Intracellular Sulfur Globules: Structure and Function

(2013) James S. Maki   JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY

Efficient ethanol production from brown macroalgae sugars by a synthetic yeast platform

(2013) Maria Enquist-Newman et al.   NATURE

Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin production

(2012) Cuauhtemoc Licona-Cassani et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Paint4Net: COBRA Toolbox extension for visualization of stoichiometric models of metabolism

(2012) Andrejs Kostromins et al.   BIOSYSTEMS

Comparative genomics reveals evidence of marine adaptation in Salinispora species

(2012) Kevin Penn et al.   BMC GENOMICS

Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data

(2011) Ali R Zomorrodi et al.   BMC Systems Biology

Selective Overproduction of the Proteasome Inhibitor Salinosporamide A via Precursor Pathway Regulation

(2011) Anna Lechner et al.   CHEMISTRY & BIOLOGY

Comparative genome-scale metabolic modeling of actinomycetes: The topology of essential core metabolism

(2011) Mohammad Tauqeer Alam et al.   FEBS LETTERS

A preliminary investigation on the growth requirement for monovalent cations, divalent cations and medium ionic strength of marine actinomycete Salinispora

(2010) Ginger Tsueng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Metabolic modeling and analysis of the metabolic switch in Streptomyces coelicolor

(2010) Mohammad T Alam et al.   BMC GENOMICS

Cell structure and dynamics

(2010) Anne Ridley et al.   CURRENT OPINION IN CELL BIOLOGY

High-throughput generation, optimization and analysis of genome-scale metabolic models

(2010) Christopher S Henry et al.   NATURE BIOTECHNOLOGY

What is flux balance analysis?

(2010) Jeffrey D Orth et al.   NATURE BIOTECHNOLOGY

A protocol for generating a high-quality genome-scale metabolic reconstruction

(2010) Ines Thiele et al.   Nature Protocols

Genome-wide gene expression changes in an industrial clavulanic acid overproduction strain of Streptomyces clavuligerus

(2010) Marnix H. Medema et al.   Microbial Biotechnology

Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways

(2009) N. Tepper et al.   BIOINFORMATICS

Impact of Natural Products on Developing New Anti-Cancer Agents†

(2009) Gordon M. Cragg et al.   CHEMICAL REVIEWS

Effect of cobalt and vitamin B12 on the production of salinosporamides by Salinispora tropica

(2009) Ginger Tsueng et al.   JOURNAL OF ANTIBIOTICS

Model-driven evaluation of the production potential for growth-coupled products of Escherichia coli

(2009) Adam M. Feist et al.   METABOLIC ENGINEERING

Applications of genome-scale metabolic reconstructions

(2009) Matthew A Oberhardt et al.   Molecular Systems Biology

Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-L-methionine

(2009) A. S. Eustaquio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Exploration and engineering of biosynthetic pathways in the marine actinomycete Salinispora tropica

(2009) Markus Nett et al.   PURE AND APPLIED CHEMISTRY

Micromonospora: An important microbe for biomedicine and potentially for biocontrol and biofuels

(2009) Ann M. Hirsch et al.   SOIL BIOLOGY & BIOCHEMISTRY

Defined salt formulations for the growth of Salinispora tropica strain NPS21184 and the production of salinosporamide A (NPI-0052) and related analogs

(2008) Ginger Tsueng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A low-sodium-salt formulation for the fermentation of salinosporamides by Salinispora tropica strain NPS21184

(2008) Ginger Tsueng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Growth of Salinispora tropica strains CNB440, CNB476, and NPS21184 in nonsaline, low-sodium media

(2008) Ginger Tsueng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

In silico genome-scale reconstruction and validation of theCorynebacterium glutamicummetabolic network

(2008) Kjeld Raunkjaer Kjeldsen et al.   BIOTECHNOLOGY AND BIOENGINEERING

Unraveling the Biosynthesis of the Sporolide Cyclohexenone Building Block

(2008) Ryan P. McGlinchey et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Reconstruction of biochemical networks in microorganisms

(2008) Adam M. Feist et al.   NATURE REVIEWS MICROBIOLOGY