Inhibition of factor-dependent transcription termination in Escherichia coli might relieve xenogene silencing by abrogating H-NS-DNA interactions in vivo

NuST: analysis of the interplay between nucleoid organization and gene expression

(2012) V. F. Scolari et al.   BIOINFORMATICS

Rho and NusG suppress pervasive antisense transcription in Escherichia coli

(2012) J. M. Peters et al.   GENES & DEVELOPMENT

A Fundamental Regulatory Mechanism Operating through OmpR and DNA Topology Controls Expression of Salmonella Pathogenicity Islands SPI-1 and SPI-2

(2012) Andrew D. S. Cameron et al.   PLoS Genetics

MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets

(2012) Zhen Shao et al.   GENOME BIOLOGY

The Sm-like RNA chaperone Hfq mediates transcription antitermination at Rho-dependent terminators

(2011) Makhlouf Rabhi et al.   EMBO JOURNAL

Modulation of Rho-Dependent Transcription Termination in Escherichia coli by the H-NS Family of Proteins

(2011) S. Saxena et al.   JOURNAL OF BACTERIOLOGY

A computational pipeline for comparative ChIP-seq analyses

(2011) Anaïs F Bardet et al.   Nature Protocols

Q&A: ChIP-seq technologies and the study of gene regulation

(2010) Edison T Liu et al.   BMC BIOLOGY

A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes

(2010) Y. Liu et al.   GENES & DEVELOPMENT

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

(2010) Christina Kahramanoglou et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Rho directs widespread termination of intragenic and stable RNA transcription

(2009) J. M. Peters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Anti-silencing: overcoming H-NS-mediated repression of transcription in Gram-negative enteric bacteria

(2008) D. M. Stoebel et al.   MICROBIOLOGY-SGM

Termination Factor Rho and Its Cofactors NusA and NusG Silence Foreign DNA in E. coli

(2008) C. J. Cardinale et al.   SCIENCE