Hidden coding potential of eukaryotic genomes: nonAUG started ORFs

Biological Implications of Isochore Boundaries in the Human Genome

(2012) Wen-Xin Zheng et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Composition Profile of the Human Genome at the Chromosome Level

(2012) Víctor Sabbbia et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Interrelations between the Nucleotide Context of Human Start AUG Codon, N-end Amino Acids of the Encoded Protein and Initiation of Translation

(2012) Oxana A. Volkova et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Relationship between Gene Compactness and Base Composition in Rice and Human Genome

(2012) Pamela Mukhopadhyay et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Nucleosome Positioning Pattern Derived from Oligonucleotide Compositions of Genomic Sequences

(2012) Alexandra E. Rapoport et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

The Molecular Interactions That Stabilize RNA Tertiary Structure: RNA Motifs, Patterns, and Networks

(2011) Samuel E. Butcher et al.   ACCOUNTS OF CHEMICAL RESEARCH

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

Identification of evolutionarily conserved non-AUG-initiated N-terminal extensions in human coding sequences

(2011) Ivaylo P. Ivanov et al.   NUCLEIC ACIDS RESEARCH

Upstream open reading frames: Molecular switches in (patho)physiology

(2010) Klaus Wethmar et al.   BIOESSAYS

The mRNA landscape at yeast translation initiation sites

(2010) A. Robbins-Pianka et al.   BIOINFORMATICS

A single sequence context cannot satisfy all non-AUG initiator codons in yeast†

(2010) Chia-Pei Chang et al.   BMC MICROBIOLOGY

On nucleotide solvent accessibility in RNA structure

(2010) Yumlembam H. Singh et al.   GENE

Multifactorial Determinants of Protein Expression in Prokaryotic Open Reading Frames

(2010) Malin Allert et al.   JOURNAL OF MOLECULAR BIOLOGY

Computational approaches to 3D modeling of RNA

(2010) Christian Laing et al.   JOURNAL OF PHYSICS-CONDENSED MATTER

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

(2010) Christine Vogel et al.   Molecular Systems Biology

Genome-wide measurement of RNA secondary structure in yeast

(2010) Michael Kertesz et al.   NATURE

The mechanism of eukaryotic translation initiation and principles of its regulation

(2010) Richard J. Jackson et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Alternative translation start sites are conserved in eukaryotic genomes

(2010) G. A. Bazykin et al.   NUCLEIC ACIDS RESEARCH

Noncanonical Translation Initiation of the Arabidopsis Flowering Time and Alternative Polyadenylation Regulator FCA

(2010) G. G. Simpson et al.   PLANT CELL

Non-ATG-initiated translation directed by microsatellite expansions

(2010) T. Zu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Initiation of translation at an upstream non-AUG codon accounting for N-terminally extended minor forms of recombinant proteins expressed in insect cells

(2010) Kieran F. Geoghegan et al.   PROTEIN EXPRESSION AND PURIFICATION

A quantitative model for mRNA translation in Saccharomyces cerevisiae

(2010) Tao You et al.   YEAST

A Comprehensive, Quantitative, and Genome-Wide Model of Translation

(2010) Marlena Siwiak et al.   PLoS Computational Biology

A Universal Trend of Reduced mRNA Stability near the Translation-Initiation Site in Prokaryotes and Eukaryotes

(2010) Wanjun Gu et al.   PLoS Computational Biology

Evolutionary Roles of Upstream Open Reading Frames in Mediating Gene Regulation in Fungi

(2009) Heather M. Hood et al.   Annual Review of Microbiology

Non-AUG translational initiation of a short CAPC transcript generating protein isoform

(2009) Suresh Anaganti et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Role of 5′- and 3′-untranslated regions of mRNAs in human diseases

(2009) Sangeeta Chatterjee et al.   BIOLOGY OF THE CELL

Upstream sequence elements direct post-transcriptional regulation of gene expression under stress conditions in yeast

(2009) Craig Lawless et al.   BMC GENOMICS

Quantitative analysis of ribosome–mRNA complexes at different translation stages

(2009) Nikolay E. Shirokikh et al.   NUCLEIC ACIDS RESEARCH

Participation of Leaky Ribosome Scanning in Protein Dual Targeting by Alternative Translation Initiation in Higher Plants

(2009) Y. Wamboldt et al.   PLANT CELL

New metrics for comparing and assessing discrepancies between RNA 3D structures and models

(2009) M. Parisien et al.   RNA

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

A case for a CUG-initiated coding sequence overlapping torovirus ORF1a and encoding a novel 30 kDa product

(2009) Andrew E Firth et al.   Virology Journal

Prediction of translation initiation sites in human mRNA sequences with AUG start codon in weak Kozak context: A neural network approach

(2008) Suhas Tikole et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Alternative translation start sites and hidden coding potential of eukaryotic mRNAs

(2008) Alex V. Kochetov   BIOESSAYS

uORFs, reinitiation and alternative translation start sites in human mRNAs

(2008) Alex V. Kochetov et al.   FEBS LETTERS

Translational Efficiency of Redundant ACG Initiator Codons Is Enhanced by a Favorable Sequence Context and Remedial Initiation

(2008) Shun-Jia Chen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

(2008) Marc Parisien et al.   NATURE