Identification of self-consistent modulons from bacterial microarray expression data with the help of structured regulon gene sets

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

(2010) D. Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Prior biological knowledge-based approaches for the analysis of genome-wide expression profiles using gene sets and pathways

(2010) Michael C Wu et al.   STATISTICAL METHODS IN MEDICAL RESEARCH

Reconstruction of Escherichia coli transcriptional regulatory networks via regulon-based associations

(2009) Hossein Zare et al.   BMC Systems Biology

An SOS-Regulated Type 2 Toxin-Antitoxin System

(2009) L. A. Singletary et al.   JOURNAL OF BACTERIOLOGY

SIRENE: supervised inference of regulatory networks

(2008) F. Mordelet et al.   BIOINFORMATICS

Implementation of GenePattern within the Stanford Microarray Database

(2008) J. Hubble et al.   NUCLEIC ACIDS RESEARCH

EcoCyc: A comprehensive view of Escherichia coli biology

(2008) I. M. Keseler et al.   NUCLEIC ACIDS RESEARCH

Geometric Interpretation of Gene Coexpression Network Analysis

(2008) Steve Horvath et al.   PLoS Computational Biology