Proteomics of Plant Pathogenic Fungi

At Death's Door: Alternaria Pathogenicity Mechanisms

(2011) Christopher B. Lawrence et al.   Plant Pathology Journal

Role of the Host-Selective ACT-Toxin Synthesis GeneACTTS2Encoding an Enoyl-Reductase in Pathogenicity of the Tangerine Pathotype ofAlternaria alternata

(2010) Naoya Ajiro et al.   PHYTOPATHOLOGY

“Pathogeno-Proteomics”

(2009) Philippe Holzmuller et al.   Annals of the New York Academy of Sciences

Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture

(2009) Gabriele Berg   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Deep proteogenomics; high throughput gene validation by multidimensional liquid chromatography and mass spectrometry of proteins from the fungal wheat pathogen Stagonospora nodorum

(2009) Scott Bringans et al.   BMC BIOINFORMATICS

Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus Puccinia striiformis f. sp. Tritici

(2009) Chuntao Yin et al.   BMC GENOMICS

cDNA-AFLP analysis reveals differential gene expression in compatible interaction of wheat challenged with Puccinia striiformis f. sp. tritici

(2009) Xiaojie Wang et al.   BMC GENOMICS

Common processes in pathogenesis by fungal and oomycete plant pathogens, described with Gene Ontology terms

(2009) Shaowu Meng et al.   BMC MICROBIOLOGY

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics

(2009) Paola Picotti et al.   CELL

Reverse Genetics for Functional Genomics of Phytopathogenic Fungi and Oomycetes

(2009) Vijai Bhadauria et al.   COMPARATIVE AND FUNCTIONAL GENOMICS

Directed mass spectrometry: towards hypothesis-driven proteomics

(2009) Alexander Schmidt et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogens

(2009) Jeffrey G Ellis et al.   CURRENT OPINION IN PLANT BIOLOGY

Hunting down fungal secretomes using liquid-phase IEF prior to high resolution 2-DE

(2009) Delphine Vincent et al.   ELECTROPHORESIS

Optimized protocol for the 2-DE of extracellular proteins from higher basidiomycetes inhabiting lignocellulose

(2009) Dorothea Fragner et al.   ELECTROPHORESIS

Proteomic studies of phytopathogenic fungi, oomycetes and their interactions with hosts

(2009) Vijai Bhadauria et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Emerging affinity-based techniques in proteomics

(2009) Shengnan Xie et al.   Expert Review of Proteomics

Comparative genomics of MAP kinase and calcium–calcineurin signalling components in plant and human pathogenic fungi

(2009) Nicolas Rispail et al.   FUNGAL GENETICS AND BIOLOGY

Reduced genomic potential for secreted plant cell-wall-degrading enzymes in the ectomycorrhizal fungus Amanita bisporigera, based on the secretome of Trichoderma reesei

(2009) Subashini Nagendran et al.   FUNGAL GENETICS AND BIOLOGY

Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists

(2009) Gabriela Aguileta et al.   INFECTION GENETICS AND EVOLUTION

Comparative Proteomic Analysis ofBotrytis cinereaSecretome

(2009) Punit Shah et al.   JOURNAL OF PROTEOME RESEARCH

FPPI:Fusarium graminearumProtein−Protein Interaction Database

(2009) Xing-Ming Zhao et al.   JOURNAL OF PROTEOME RESEARCH

A Comparison of Labeling and Label-Free Mass Spectrometry-Based Proteomics Approaches

(2009) Vibhuti J. Patel et al.   JOURNAL OF PROTEOME RESEARCH

Plant proteomics update (2007–2008): Second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge

(2009) Jesús V. Jorrín-Novo et al.   Journal of Proteomics

Scanning electron microscopy applied to seed-borne fungi examination

(2009) Marcelo De Carvalho Alves et al.   MICROSCOPY RESEARCH AND TECHNIQUE

A Human Proteome Detection and Quantitation Project

(2009) N. Leigh Anderson et al.   MOLECULAR & CELLULAR PROTEOMICS

In PlantaProteomics and Proteogenomics of the Biotrophic Barley Fungal PathogenBlumeria graminisf. sp.hordei

(2009) Laurence V. Bindschedler et al.   MOLECULAR & CELLULAR PROTEOMICS

Assessing the impact of transcriptomics, proteomics and metabolomics on fungal phytopathology

(2009) KAR-CHUN TAN et al.   MOLECULAR PLANT PATHOLOGY

Fungal effector proteins: past, present and future

(2009) PIERRE J. G. M. DE WIT et al.   MOLECULAR PLANT PATHOLOGY

Identification of virulence genes inFusarium oxysporumf. sp.lycopersiciby large-scale transposon tagging

(2009) MANUEL SÁNCHEZ LÓPEZ-BERGES et al.   MOLECULAR PLANT PATHOLOGY

Fusarium oxysporumSte12 Controls Invasive Growth and Virulence Downstream of the Fmk1 MAPK Cascade

(2009) Nicolas Rispail et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Comparative analysis to guide quality improvements in proteomics

(2009) Matthias Mann   NATURE METHODS

Action and reaction of host and pathogen during Fusarium head blight disease

(2009) Stephanie Walter et al.   NEW PHYTOLOGIST

Effectors of biotrophic fungi and oomycetes: pathogenicity factors and triggers of host resistance

(2009) Peter N. Dodds et al.   NEW PHYTOLOGIST

Ectopic expression of MgSM1, a Cerato-platanin family protein fromMagnaporthe grisea, confers broad-spectrum disease resistance in Arabidopsis

(2009) Yayun Yang et al.   PLANT BIOTECHNOLOGY JOURNAL

Metabolomic analysis reveals a common pattern of metabolic re-programming during invasion of three host plant species byMagnaporthe grisea

(2009) David Parker et al.   PLANT JOURNAL

Flow cytometric purification ofColletotrichum higginsianumbiotrophic hyphae from Arabidopsis leaves for stage-specific transcriptome analysis

(2009) Hiroyuki Takahara et al.   PLANT JOURNAL

Aggressiveness and its role in the adaptation of plant pathogens

(2009) B. Pariaud et al.   PLANT PATHOLOGY

Up-regulated transcripts in a compatible powdery mildew–grapevine interaction

(2009) Csaba Fekete et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Localization predictions for gene products involved in non-host resistance responses in a model plant/fungal pathogen interaction

(2009) Lee A. Hadwiger   PLANT SCIENCE

Apoplastic effectors secreted by two unrelated eukaryotic plant pathogens target the tomato defense protease Rcr3

(2009) J. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa

(2009) Chaoguang Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A proteomic evaluation of Pyrenophora tritici-repentis, causal agent of tan spot of wheat, reveals major differences between virulent and avirulent isolates

(2009) Tiesen Cao et al.   PROTEOMICS

Identification of elicitor-responsive proteins in rice leaves by a proteomic approach

(2009) Ming Liao et al.   PROTEOMICS

The art of observing rare protein species in proteomes with peptide ligand libraries

(2009) Egisto Boschetti et al.   PROTEOMICS

A proteomics study of barley powdery mildew haustoria

(2009) Dale Godfrey et al.   PROTEOMICS

Proteomic analysis of the phytopathogenic fungusBotrytis cinereaduring cellulose degradation

(2009) Francisco Javier Fernández-Acero et al.   PROTEOMICS

A proteomic study of pectin-degrading enzymes secreted by Botrytis cinerea grown in liquid culture

(2009) Punit Shah et al.   PROTEOMICS

Proteomic analysis of fungal host factors differentially expressed by Fusarium graminearum infected with Fusarium graminearum virus-DK21

(2009) Sun-Jung Kwon et al.   VIRUS RESEARCH

A Novel Pathogenicity Gene Is Required in the Rice Blast Fungus to Suppress the Basal Defenses of the Host

(2009) Myoung-Hwan Chi et al.   PLoS Pathogens

The Powdery Mildews: A Review of the World's Most Familiar (Yet Poorly Known) Plant Pathogens

(2008) Dean A. Glawe   Annual Review of Phytopathology

Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood

(2008) Holy Ravalason et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

(2008) K. Strimmer   BIOINFORMATICS

The Prediction of Protein-Protein Interaction Networks in Rice Blast Fungus

(2008) Fei He et al.   BMC GENOMICS

Host-specific toxins: effectors of necrotrophic pathogenicity

(2008) Timothy L. Friesen et al.   CELLULAR MICROBIOLOGY

Mass spectrometry for proteomics

(2008) Xuemei Han et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Genomes, free radicals and plant cell invasion: recent developments in plant pathogenic fungi

(2008) Martin J Egan et al.   CURRENT OPINION IN PLANT BIOLOGY

Enzyme–inhibitor interactions at the plant–pathogen interface

(2008) Johana C Misas-Villamil et al.   CURRENT OPINION IN PLANT BIOLOGY

Protein extraction for proteome analysis from cacao leaves and meristems, organs infected byMoniliophthora perniciosa, the causal agent of the witches' broom disease

(2008) Carlos Priminho Pirovani et al.   ELECTROPHORESIS

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

(2008) Eric W Deutsch et al.   EMBO REPORTS

A Signaling-Regulated, Short-Chain Dehydrogenase ofStagonospora nodorumRegulates Asexual Development

(2008) Kar-Chun Tan et al.   EUKARYOTIC CELL

Calcineurin-Responsive Zinc Finger Transcription Factor CRZ1 ofBotrytis cinereaIs Required for Growth, Development, and Full Virulence on Bean Plants

(2008) Julia Schumacher et al.   EUKARYOTIC CELL

Proteomic analysis of a compatible interaction between Pisum sativum (pea) and the downy mildew pathogen Peronospora viciae

(2008) R. C. Amey et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Plant-pathogen interactions: what is proteomics telling us?

(2008) Angela Mehta et al.   FEBS Journal

Biomarkers of Aspergillus spores: Strain typing and protein identification

(2008) Miroslav Sulc et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Proteomic Study of Biocontrol Mechanisms of Trichoderma harzianum ETS 323 in Response to Rhizoctonia solani

(2008) Shih-Chi Tseng et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Proteome Changes in Leaves of Brassica napus L. as a Result of Sclerotinia sclerotiorum Challenge

(2008) Yue Liang et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Identification of differentially expressed proteins in poplar leaves induced by Marssonina brunnea f. sp. Multigermtubi

(2008) Kun Yuan et al.   Journal of Genetics and Genomics

Proteomic Analysis ofPinus radiataNeedles: 2-DE Map and Protein Identification by LC/MS/MS and Substitution-Tolerant Database Searching

(2008) Luis Valledor et al.   JOURNAL OF PROTEOME RESEARCH

An Assessment of Software Solutions for the Analysis of Mass Spectrometry Based Quantitative Proteomics Data

(2008) Lukas N. Mueller et al.   JOURNAL OF PROTEOME RESEARCH

Multivariate Data Analysis of Two-Dimensional Gel Electrophoresis Protein Patterns from Few Samples†

(2008) Kristina Nedenskov Jensen et al.   JOURNAL OF PROTEOME RESEARCH

Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis

(2008) Ana M. Maldonado et al.   Journal of Proteomics

A proteomics approach to identify proteins differentially expressed in Douglas-fir seedlings infected by Phellinus sulphurascens

(2008) M. Aminul Islam et al.   Journal of Proteomics

Comparative proteomic studies of root–microbe interactions

(2008) Ulrike Mathesius   Journal of Proteomics

The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program

(2008) Michel Schneider et al.   Journal of Proteomics

Power and limitations of electrophoretic separations in proteomics strategies

(2008) Thierry Rabilloud et al.   MASS SPECTROMETRY REVIEWS

Proteomic analysis of Metarhizium anisopliae secretion in the presence of the insect pest Callosobruchus maculatus

(2008) A. M. Murad et al.   MICROBIOLOGY-SGM

Quantitative Proteomic Analysis of Bean Plants Infected by a Virulent and Avirulent Obligate Rust Fungus

(2008) Joohyun Lee et al.   MOLECULAR & CELLULAR PROTEOMICS

Development, identification, and validation of markers for marker-assisted selection against the Stagonospora nodorum toxin sensitivity genes Tsn1 and Snn2 in wheat

(2008) Zengcui Zhang et al.   MOLECULAR BREEDING

The novelCladosporium fulvumlysin motif effector Ecp6 is a virulence factor with orthologues in other fungal species

(2008) Melvin D. Bolton et al.   MOLECULAR MICROBIOLOGY

A proteomic analysis of powdery mildew (Blumeria graminisf.sp.hordei) conidiospores

(2008) SANDRA NOIR et al.   MOLECULAR PLANT PATHOLOGY

Oxalic Acid Is an Elicitor of Plant Programmed Cell Death duringSclerotinia sclerotiorumDisease Development

(2008) Kyoung Su Kim et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Optimized protein extraction methods for proteomic analysis of Rhizoctonia solani

(2008) Dilip K. Lakshman et al.   MYCOLOGIA

Building consensus spectral libraries for peptide identification in proteomics

(2008) Henry Lam et al.   NATURE METHODS

Fungal proteins in the extra-radical phase of arbuscular mycorrhiza: a shotgun proteomic picture

(2008) Ghislaine Recorbet et al.   NEW PHYTOLOGIST

Data analysis and bioinformatics tools for tandem mass spectrometry in proteomics

(2008) Eric W. Deutsch et al.   PHYSIOLOGICAL GENOMICS

The Cladosporium fulvum Virulence Protein Avr2 Inhibits Host Proteases Required for Basal Defense

(2008) H. P. van Esse et al.   PLANT CELL

Biochemical approaches for discovering protein-protein interactions

(2008) Jan A. Miernyk et al.   PLANT JOURNAL

Towards multidimensional liquid chromatography separation of proteins using fluorescence and isotope-coded protein labelling for quantitative proteomics

(2008) Florian Tribl et al.   PROTEOMICS

Evaluating the compatibility of three colorimetric protein assays for two-dimensional electrophoresis experiments

(2008) Shao-Hsuan Kao et al.   PROTEOMICS

Differential expression of proteins in response to the interaction between the pathogenFusarium graminearum and its host,Hordeum vulgare

(2008) Jennifer Geddes et al.   PROTEOMICS

Towards identifying Brassica proteins involved in mediating resistance to Leptosphaeria maculans: A proteomics-based approach

(2008) Nidhi Sharma et al.   PROTEOMICS

Proteomic analyses ofFusarium graminearum grown under mycotoxin-inducing conditions

(2008) Rebecca D. Taylor et al.   PROTEOMICS

Technologies and methods for sample pretreatment in efficient proteome and peptidome analysis

(2008) Xiaogang Jiang et al.   PROTEOMICS

Treatment of missing values for multivariate statistical analysis of gel-based proteomics data

(2008) Romina Pedreschi et al.   PROTEOMICS

Analysis of cotton (Gossypium hirsutum) root proteomes during a compatible interaction with the black root rot fungus Thielaviopsis basicola

(2008) Joëlle V. F. Coumans et al.   PROTEOMICS

Host-derived lipids and oxylipins are crucial signals in modulating mycotoxin production by fungi

(2008) Xiquan Gao et al.   Toxin Reviews

Shades of gray: the world of quantitative disease resistance

(2008) Jesse A. Poland et al.   TRENDS IN PLANT SCIENCE

Suppression of Plant Resistance Gene-Based Immunity by a Fungal Effector

(2008) Petra M. Houterman et al.   PLoS Pathogens

Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae

(2008) Yeonyee Oh et al.   GENOME BIOLOGY

Profiling theMonascus pilosusProteome during Nitrogen Limitation

(2007) Wun-Yuan Lin et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Proteome-level changes in the roots of Brassica napus as a result of Plasmodiophora brassicae infection

(2007) Tiesen Cao et al.   PLANT SCIENCE

Enhanced analytical power of SDS-PAGE using machine learning algorithms

(2007) Fran Supek et al.   PROTEOMICS