Global Analysis of the Regulon of the Transcriptional Repressor LexA, a Key Component of SOS Response inMycobacterium tuberculosis

Genome-Wide Definition of the SigF Regulon in Mycobacterium tuberculosis

(2012) R. C. Hartkoorn et al.   JOURNAL OF BACTERIOLOGY

BayesPeak—an R package for analysing ChIP-seq data

(2011) Jonathan Cairns et al.   BIOINFORMATICS

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

ClpR Protein-like Regulator Specifically Recognizes RecA Protein-independent Promoter Motif and Broadly Regulates Expression of DNA Damage-inducible Genes in Mycobacteria

(2011) Yi Wang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The PurR regulon in Escherichia coli K-12 MG1655

(2011) Byung-Kwan Cho et al.   NUCLEIC ACIDS RESEARCH

The β-propeller gene Rv1057 of Mycobacterium tuberculosis has a complex promoter directly regulated by both the MprAB and TrcRS two-component systems

(2011) Xiuhua Pang et al.   TUBERCULOSIS

Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis

(2011) Kristine B. Arnvig et al.   PLoS Pathogens

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Translational Regulation of Gene Expression by an Anaerobically Induced Small Non-coding RNA in Escherichia coli

(2010) Anders Boysen et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Essential roles for imuA'- and imuB-encoded accessory factors in DnaE2-dependent mutagenesis in Mycobacterium tuberculosis

(2010) D. F. Warner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BayesPeak: Bayesian analysis of ChIP-seq data

(2009) Christiana Spyrou et al.   BMC BIOINFORMATICS

RecA-Independent DNA Damage Induction of Mycobacterium tuberculosis ruvC Despite an Appropriately Located SOS Box

(2009) L. F. Dawson et al.   JOURNAL OF BACTERIOLOGY

Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays

(2009) N. Jochmann et al.   MICROBIOLOGY-SGM

Experimental determination of translational start sites resolves uncertainties in genomic open reading frame predictions - application to Mycobacterium tuberculosis

(2009) K. L. Smollett et al.   MICROBIOLOGY-SGM

Identification of small RNAs inMycobacterium tuberculosis

(2009) Kristine B. Arnvig et al.   MOLECULAR MICROBIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Genome-wide regulon and crystal structure of BlaI (Rv1846c) fromMycobacterium tuberculosis

(2008) Claudia Sala et al.   MOLECULAR MICROBIOLOGY

The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions

(2008) Tomohiro Shimada et al.   NUCLEIC ACIDS RESEARCH