Cell Type-specific Target Selection by Combinatorial Binding of Smad2/3 Proteins and Hepatocyte Nuclear Factor 4α in HepG2 Cells

ChIP-chip versus ChIP-seq: Lessons for experimental design and data analysis

(2011) Joshua WK Ho et al.   BMC GENOMICS

Smad2 mediates Activin/Nodal signaling in mesendoderm differentiation of mouse embryonic stem cells

(2010) Teng Fei et al.   CELL RESEARCH

Organogenesis and Development of the Liver

(2010) Karim Si-Tayeb et al.   DEVELOPMENTAL CELL

Differentiation-Specific Histone Modifications Reveal Dynamic Chromatin Interactions and Partners for the Intestinal Transcription Factor CDX2

(2010) Michael P. Verzi et al.   DEVELOPMENTAL CELL

A CTCF-independent role for cohesin in tissue-specific transcription

(2010) D. Schmidt et al.   GENOME RESEARCH

Arkadia complexes with clathrin adaptor AP2 and regulates EGF signalling

(2010) Anna Mizutani et al.   JOURNAL OF BIOCHEMISTRY

The ERK1/2-Hepatocyte Nuclear Factor 4α Axis Regulates HumanABCC6Gene Expression in Hepatocytes

(2010) Hugues de Boussac et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomic Analysis of Native Hepatocyte Nuclear Factor-4α (HNF4α) Isoforms, Phosphorylation Status, and Interactive Cofactors

(2010) Kenji Daigo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Regulation of Human Apolipoprotein M Gene Expression by Orphan and Ligand-dependent Nuclear Receptors

(2010) Ioanna Mosialou et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding

(2010) D. Schmidt et al.   SCIENCE

Mapping of HNF4α target genes in intestinal epithelial cells

(2009) Mette Boyd et al.   BMC GASTROENTEROLOGY

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules

(2009) Huaxia Qin et al.   BMC Systems Biology

Promoter-wide analysis of Smad4 binding sites in human epithelial cells

(2009) Daizo Koinuma et al.   CANCER SCIENCE

Cellular context-dependent “colors” of transforming growth factor-β signaling

(2009) Hiroaki Ikushima et al.   CANCER SCIENCE

Bone morphogenetic protein receptors and signal transduction

(2009) K. Miyazono et al.   JOURNAL OF BIOCHEMISTRY

Context-dependent regulation of the expression of c-Ski protein by Arkadia in human cancer cells

(2009) Yoshiko Nagano et al.   JOURNAL OF BIOCHEMISTRY

FoxO1 and HNF-4 Are Involved in Regulation of Hepatic Glucokinase Gene Expression by Resveratrol

(2009) Goutham Kumar Ganjam et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

DNA demethylation in hormone-induced transcriptional derepression

(2009) Mi-Sun Kim et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

ChIP–seq: advantages and challenges of a maturing technology

(2009) Peter J. Park   NATURE REVIEWS GENETICS

Molecular interactions between HNF4a, FOXA2 and GABP identified at regulatory DNA elements through ChIP-sequencing

(2009) Ola Wallerman et al.   NUCLEIC ACIDS RESEARCH

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

(2009) Elodie Portales-Casamar et al.   NUCLEIC ACIDS RESEARCH

Mechanisms involved in the regulation of histone lysine demethylases

(2008) Fei Lan et al.   CURRENT OPINION IN CELL BIOLOGY

The enhanceosome

(2008) Daniel Panne   CURRENT OPINION IN STRUCTURAL BIOLOGY

Downregulation of hepatocyte nuclear factor-4α and its role in regulation of gene expression by TGF-β in mammary epithelial cells

(2008) Fumihiro Ishikawa et al.   EXPERIMENTAL CELL RESEARCH

Chromatin Immunoprecipitation on Microarray Analysis of Smad2/3 Binding Sites Reveals Roles of ETS1 and TFAP2A in Transforming Growth Factor   Signaling

(2008) D. Koinuma et al.   MOLECULAR AND CELLULAR BIOLOGY

Cohesin mediates transcriptional insulation by CCCTC-binding factor

(2008) Kerstin S. Wendt et al.   NATURE

An integrated software system for analyzing ChIP-chip and ChIP-seq data

(2008) Hongkai Ji et al.   NATURE BIOTECHNOLOGY

Enforced Expression ofMixl1During Mouse ES Cell Differentiation Suppresses Hematopoietic Mesoderm and Promotes Endoderm Formation

(2008) Sue Mei Lim et al.   STEM CELLS