Article
Chemistry, Organic
Ryosuke Tanaya, Takeshi Kodama, Yuan-E Lee, Yoko Yasuno, Tetsuro Shinada, Hironobu Takahashi, Takuya Ito, Hiroyuki Morita, Suresh Awale, Futoshi Taura
Summary: This study explores the synthesis of various CBGA analogues, including a liverwort-derived bibenzyl acid precursor, using CsPT4. The synthesized natural and new-to-nature cannabinoids exhibit potent cytotoxicity in human pancreatic cancer cells. CsPT4 has the potential to expand the diversity of cannabinoid biosynthesis with novel and improved biological activities.
Article
Chemistry, Multidisciplinary
Lukas Kahlert, Miranda Villanueva, Russell J. Cox, Elizabeth J. Skellam
Summary: The polyketide synthase-like protein TerB, with inactive dehydratase, inactive C-methyltransferase, and functional ketoreductase domains, collaborates with TerA to produce 6-hydroxymellein, a key intermediate in the biosynthesis of fungal natural products. The catalytically inactive dehydratase domain of TerB interacts productively with TerA in a new mode of trans-interaction between iterative PKS components.
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
(2021)
Article
Agriculture, Multidisciplinary
Joanna Afokai Quaye, Daniel Ouedraogo, Giovanni Gadda
Summary: The commercial food and l-amino acid industries use bioengineered d-amino acid oxidizing enzymes to detect and remove d-amino acid contaminants. This study successfully engineered a faster biocatalyst through mutation and kinetic methods, which has potential applications in industrial settings.
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY
(2023)
Article
Biochemistry & Molecular Biology
Alexander U. Bissell, Julia Rautschek, Sandra Hoefgen, Luka Raguz, Derek J. Mattern, Nauman Saeed, Slavica Janevska, Katarina Jojic, Ying Huang, Johann E. Kufs, Barbara Herboeck, Huijuan Guo, Falk Hillmann, Christine Beemelmanns, Vito Valiante
Summary: This study identified and elucidated the biosynthetic gene cluster responsible for the biosynthesis of sphingofungins B, C, and D in Aspergillus fumigatus, as well as the initial steps of sphingofungin biosynthesis. Furthermore, different aminomalonate derivatives were found to be used as substrates for various chemical variants of sphingofungins produced by Paecilomyces variotii, enhancing our understanding of the general biosynthesis of sphingolipid inhibitors in fungi.
ACS CHEMICAL BIOLOGY
(2022)
Review
Biochemistry & Molecular Biology
Jialiang Wang, Zixin Deng, Jingdan Liang, Zhijun Wang
Summary: Iterative type I polyketide synthases (iPKSs) are megaenzymes that synthesize complex natural products with diverse bioactivities. The programmed patterns of domain combinations during the synthetic cycle of iPKSs strongly influence the complexity of the resulting natural products. This article reviews the structural enzymology of iPKSs, focusing on individual domain structures and their representative programming activities.
NATURAL PRODUCT REPORTS
(2023)
Article
Oncology
Chiao-Pei Cheng, Shu-Ting Liu, Yi-Lin Chiu, Shih-Ming Huang, Ching-Liang Ho
Summary: The study shows that overexpression of USP2a leads to stabilization of FAS protein, and inhibiting USP2a activity can increase FAS protein degradation, highlighting the importance of finding inhibitors of USP2a. 6-Thioguanine and 6-Mercaptopurine can decrease levels of USP2a target proteins FAS and Mdm2, and affect cell cycle proteins to regulate the cell cycle.
FRONTIERS IN ONCOLOGY
(2021)
Article
Biochemistry & Molecular Biology
Maki Nishii, Shoki Ito, Takashi Osanai
Summary: This study investigated the biochemical properties of citrate synthase (CS) from C. merolae mitochondria (CmCS4). The results showed that CmCS4 exhibited higher catalytic efficiency for oxaloacetate and acetyl-CoA compared to cyanobacteria species. The high catalytic efficiency of CmCS4 may contribute to increased carbon flow into the tricarboxylic acid (TCA) cycle in C. merolae.
PLANT MOLECULAR BIOLOGY
(2023)
Article
Chemistry, Multidisciplinary
Sabina Siles-Quesada, Christopher M. A. Parlett, Alexander C. Lamb, Jinesh C. Manayil, Yang Liu, Jim Mensah, Hamidreza Arandiyan, Karen Wilson, Adam F. Lee
Summary: Researchers successfully synthesized an ordered macroporous KIT-6 material with 370nm macropores, a face-centered cubic Ia3d structure, and 5nm mesopore channels. After functionalization, this material allows rapid diffusion and esterification of fatty acids. Compared with traditional mesoporous PrSO3H/KIT-6, the esterification rate of fatty acids increased by 5 times, and it also showed a 33% enhancement compared with ordered macroporous PrSO3H/SBA-15.
MATERIALS TODAY CHEMISTRY
(2023)
Article
Biochemistry & Molecular Biology
Jacque L. Faylo, David W. Christianson
Summary: Cryo-electron microscopy has revolutionized the study of transient protein-protein interactions in biosynthesis processes such as fatty acids, polyketides, and terpenes. By using chemical crosslinking to stabilize transient complexes and techniques like partial signal subtraction and localized reconstruction, useful structural information can be extracted from inherently dynamic systems. These approaches enable direct observation of transient complexes critical for assembly-line biosynthesis, offering insights that are otherwise challenging to obtain through traditional methods like X-ray crystallography.
JOURNAL OF STRUCTURAL BIOLOGY
(2021)
Article
Chemistry, Applied
Agata Wawrzynczak, Sylwia Jarmolinska, Izabela Nowak
Summary: In this study, ordered nanostructured KIT-6 silica with different numbers of sulfonic groups were synthesized. The amount of the functional group precursor used affected the structural and textural parameters of the synthesized materials. The samples modified by grafting exhibited a stable mesoporous structure, while the ones synthesized by co-condensation showed characteristics of KIT-6 materials. The developed synthesis procedures yielded potential solid acid catalysts with desirable catalytic performances.
Review
Biochemistry & Molecular Biology
Rose Syuhada Basri, Raja Noor Zaliha Raja Abd Rahman, Nor Hafizah Ahmad Kamarudin, Mohd Shukuri Mohamad Ali
Summary: Biocatalysts have gained attention for their industrial-relevant properties, which can contribute to a cleaner environment. Carboxylic acid reductases (CARs) are large proteins that can convert carboxylic acids to aldehydes with the presence of ATP and NADPH. CARs have potential applications in various industrial processes, and recent studies have provided valuable insights into their structure, mechanisms, and immobilization approaches. This comprehensive review summarizes previous findings on CARs' phylogeny, structure, mechanism, post-translational modification, cofactor regeneration, industrial applications, and immobilization techniques.
INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES
(2023)
Article
Chemistry, Multidisciplinary
Xiaoyu Lin, Xuemei Huang, Xuehao Tian, Zhihua Yuan, Jihui Lu, Xueqiang Nie, Pengli Wang, Haimin Lei, Penglong Wang
Summary: This study explores the self-assembly of small molecules derived from traditional Chinese herbal medicine and demonstrates that Rheum and Coptis can self-assemble into nanofibers and nanoparticles. This research provides insights and references for the design of self-assemblies of small molecules in the future.
Article
Biochemistry & Molecular Biology
Shaimaa Maher, Lauren A. Smith, Celine A. El-Khoury, Haitham Kalil, Khalid Sossey-Alaoui, Mekki Bayachou
Summary: Nitric oxide (NO) is a small molecule that has a significant impact on various biological activities. It has been linked to cancer-related processes and has the potential to be used as an anti-cancer agent. In this study, NO-releasing materials were developed using modified sodium alginate hydrogel, which showed compatibility with cell growth. The release of NO from the hydrogel exhibited distinct kinetic features.
Article
Chemistry, Physical
Zaheer Khan, Ommer Bashir, Shaeel Ahmad AL-Thabaiti, M. Z. A. Rafiquee
Summary: The synthesis of glycine-capped copper nanoparticles was achieved using a complex-reduction method. The catalytic activity was found to increase with an increasing number of incorporated metals. Various kinetic parameters were calculated for different concentrations of promoter, catalyst, and temperature.
JOURNAL OF MOLECULAR LIQUIDS
(2021)
Review
Cell Biology
Gongqin Sun, Marina K. Ayrapetov
Summary: Protein tyrosine kinases (PTKs) are a large enzyme family that regulates many cellular processes. Understanding the structural basis of PTK catalysis and regulation is important for manipulating signaling networks in normal and cancer cells.
FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY
(2023)
Article
Biochemistry & Molecular Biology
Yasuo Yoshida, Mitsunari Sato, Yuichiro Kezuka, Yoshiaki Hasegawa, Keiji Nagano, Jun Takebe, Fuminobu Yoshimura
ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS
(2016)
Article
Biochemistry & Molecular Biology
Yuichiro Kezuka, Tetsuo Ishida, Yasuo Yoshida, Takamasa Nonaka
BIOCHEMICAL JOURNAL
(2018)
Article
Biochemical Research Methods
Yuichiro Kezuka, Takashi Itagaki, Rie Satoh, Reiko Teshima, Takamasa Nonaka
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS
(2009)
Article
Biochemical Research Methods
Yuichiro Kezuka, Naoto Abe, Yasuo Yoshida, Takamasa Nonaka
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS
(2012)
Article
Biochemical Research Methods
Masahiko Kato, Yuichiro Kezuka, Chihoko Kobayashi, Kazuhiro Ishibashi, Takamasa Nonaka, Masayuki Ishikawa, Estuko Katoh
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS
(2013)
Article
Biochemistry & Molecular Biology
Hongyu Xiang, Hiromi Takeuchi, Yuki Tsunoda, Masatoshi Nakajima, Katsuyoshi Murata, Miyako Ueguchi-Tanaka, Shun-ichi Kidokoro, Yuichiro Kezuka, Takamasa Nonaka, Makoto Matsuoka, Etsuko Katoh
JOURNAL OF MOLECULAR RECOGNITION
(2011)
Article
Microbiology
Yasuo Yoshida, Shuntaro Ito, Masaharu Kamo, Yuichiro Kezuka, Haruki Tamura, Kazushi Kunimatsu, Hirohisa Kato
Article
Microbiology
Yasuo Yoshida, Kyosuke Suwabe, Keiji Nagano, Yuichiro Kezuka, Hirohisa Kato, Fuminobu Yoshimura
Article
Multidisciplinary Sciences
Kazuhiro Ishibashi, Yuichiro Kezuka, Chihoko Kobayashi, Masahiko Kato, Tsuyoshi Inoue, Takamasa Nonaka, Masayuki Ishikawa, Hiroyoshi Matsumura, Etsuko Katoh
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2014)
Article
Biochemistry & Molecular Biology
Yuichiro Kezuka, Masaki Kojima, Ryoji Mizuno, Kazushi Suzuki, Takeshi Watanabe, Takamasa Nonaka
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
(2010)
Article
Biochemistry & Molecular Biology
Yuichiro Kezuka, Yasuo Yoshida, Takamasa Nonaka
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
(2012)
Meeting Abstract
Chemistry, Multidisciplinary
Y. Kezuka, Y. Yoshida, T. Nonaka
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES
(2014)
Article
Multidisciplinary Sciences
Hongyu Xiang, Hideyasu Okamura, Yuichiro Kezuka, Etsuko Katoh
SCIENTIFIC REPORTS
(2018)
Article
Microbiology
Yasuo Yoshida, Mitsunari Sato, Takamasa Nonaka, Yoshiaki Hasegawa, Yuichiro Kezuka
JOURNAL OF ORAL MICROBIOLOGY
(2019)